Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PV002_RS06695 | Genome accession | NZ_CP118356 |
| Coordinates | 1390099..1391160 (+) | Length | 353 a.a. |
| NCBI ID | WP_003812760.1 | Uniprot ID | K0MEU1 |
| Organism | Bordetella pertussis strain SA22 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1345582..1391160 | 1390099..1391160 | within | 0 |
Gene organization within MGE regions
Location: 1345582..1391160
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PV002_RS06440 (PV002_06455) | - | 1345633..1346436 (+) | 804 | WP_010931015.1 | ABC transporter permease | - |
| PV002_RS06445 (PV002_06460) | - | 1346438..1348072 (+) | 1635 | WP_010931014.1 | ABC transporter ATP-binding protein | - |
| PV002_RS06450 (PV002_06465) | - | 1348156..1349217 (+) | 1062 | WP_010931013.1 | LacI family DNA-binding transcriptional regulator | - |
| PV002_RS06455 (PV002_06470) | - | 1349416..1349685 (+) | 270 | WP_004567322.1 | hypothetical protein | - |
| PV002_RS06460 (PV002_06475) | - | 1349689..1350213 (+) | 525 | WP_010931012.1 | AlpA family transcriptional regulator | - |
| PV002_RS06465 (PV002_06480) | - | 1350222..1350554 (-) | 333 | WP_224019493.1 | MerR family DNA-binding protein | - |
| PV002_RS06470 (PV002_06485) | - | 1350629..1351579 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| PV002_RS06475 (PV002_06490) | - | 1351576..1352610 (-) | 1035 | WP_010931011.1 | metal-dependent hydrolase | - |
| PV002_RS06480 (PV002_06495) | - | 1352719..1353357 (+) | 639 | WP_003816758.1 | DedA family protein | - |
| PV002_RS06490 (PV002_06505) | - | 1353652..1353879 (+) | 228 | WP_019247724.1 | GNAT family N-acetyltransferase | - |
| PV002_RS06495 (PV002_06510) | - | 1354002..1354715 (+) | 714 | WP_003820420.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| PV002_RS06500 (PV002_06515) | - | 1354960..1355910 (-) | 951 | WP_005013747.1 | IS481-like element IS481 family transposase | - |
| PV002_RS06505 (PV002_06520) | - | 1356014..1356295 (+) | 282 | WP_010931009.1 | hypothetical protein | - |
| PV002_RS06510 (PV002_06525) | - | 1356410..1357858 (-) | 1449 | WP_010931008.1 | PLP-dependent aminotransferase family protein | - |
| PV002_RS06515 (PV002_06530) | - | 1357969..1358919 (+) | 951 | WP_005012808.1 | IS481-like element IS481 family transposase | - |
| PV002_RS06520 (PV002_06535) | dut | 1358916..1359365 (-) | 450 | WP_003816756.1 | dUTP diphosphatase | - |
| PV002_RS06525 (PV002_06540) | - | 1359560..1360510 (+) | 951 | WP_010929584.1 | IS481-like element IS481 family transposase | - |
| PV002_RS06530 (PV002_06545) | rpmI | 1360846..1361043 (+) | 198 | WP_003812834.1 | 50S ribosomal protein L35 | - |
| PV002_RS06535 (PV002_06550) | rplT | 1361059..1361418 (+) | 360 | WP_003812832.1 | 50S ribosomal protein L20 | - |
| PV002_RS06540 (PV002_06555) | pheS | 1361493..1362515 (+) | 1023 | WP_010926359.1 | phenylalanine--tRNA ligase subunit alpha | - |
| PV002_RS06545 (PV002_06560) | pheT | 1362528..1364945 (+) | 2418 | WP_010931007.1 | phenylalanine--tRNA ligase subunit beta | - |
| PV002_RS06550 (PV002_06565) | - | 1364951..1365292 (+) | 342 | WP_010931006.1 | integration host factor subunit alpha | - |
| PV002_RS06555 (PV002_06570) | - | 1365351..1365761 (+) | 411 | WP_003812822.1 | MerR family transcriptional regulator | - |
| PV002_RS06565 (PV002_06580) | - | 1366261..1367352 (-) | 1092 | WP_010931005.1 | hypothetical protein | - |
| PV002_RS06570 (PV002_06585) | - | 1367536..1368132 (+) | 597 | WP_010931004.1 | lipoprotein | - |
| PV002_RS06575 (PV002_06590) | - | 1368232..1368414 (-) | 183 | WP_004567479.1 | hypothetical protein | - |
| PV002_RS06580 (PV002_06595) | - | 1368525..1369475 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| PV002_RS06590 (PV002_06605) | - | 1370213..1370545 (+) | 333 | WP_023853503.1 | hypothetical protein | - |
| PV002_RS06595 (PV002_06610) | - | 1370687..1371427 (-) | 741 | WP_023853497.1 | endonuclease | - |
| PV002_RS06600 (PV002_06615) | - | 1371603..1371734 (+) | 132 | WP_003812797.1 | entericidin A/B family lipoprotein | - |
| PV002_RS06605 (PV002_06620) | - | 1371860..1372294 (+) | 435 | WP_010931001.1 | lipoprotein | - |
| PV002_RS06610 (PV002_06625) | - | 1372296..1372709 (+) | 414 | WP_003820436.1 | membrane protein | - |
| PV002_RS06615 (PV002_06630) | - | 1372816..1374111 (+) | 1296 | WP_010926366.1 | aspartate carbamoyltransferase | - |
| PV002_RS06620 (PV002_06635) | - | 1374151..1375050 (-) | 900 | WP_003812788.1 | recombination-associated protein RdgC | - |
| PV002_RS06625 | - | 1375204..1375419 (+) | 216 | Protein_1301 | hypothetical protein | - |
| PV002_RS06630 (PV002_06645) | - | 1375672..1376979 (-) | 1308 | WP_023994674.1 | CaiB/BaiF CoA-transferase family protein | - |
| PV002_RS06635 (PV002_06650) | - | 1376996..1377883 (-) | 888 | WP_010930998.1 | LysR substrate-binding domain-containing protein | - |
| PV002_RS06640 (PV002_06655) | - | 1378099..1379262 (+) | 1164 | WP_010930997.1 | hypothetical protein | - |
| PV002_RS06645 (PV002_06660) | - | 1379270..1379662 (+) | 393 | WP_010930996.1 | Zn-ribbon domain-containing OB-fold protein | - |
| PV002_RS06650 (PV002_06665) | - | 1379663..1380106 (+) | 444 | WP_003820449.1 | MaoC/PaaZ C-terminal domain-containing protein | - |
| PV002_RS06655 (PV002_06670) | - | 1380107..1380853 (+) | 747 | WP_010930995.1 | SDR family oxidoreductase | - |
| PV002_RS06660 (PV002_06675) | - | 1380891..1381928 (+) | 1038 | WP_004567469.1 | ABC transporter substrate-binding protein | - |
| PV002_RS06665 (PV002_06680) | - | 1381957..1383708 (+) | 1752 | WP_010930994.1 | iron ABC transporter permease | - |
| PV002_RS06670 (PV002_06685) | - | 1383705..1384769 (+) | 1065 | WP_010930993.1 | ABC transporter ATP-binding protein | - |
| PV002_RS06675 (PV002_06690) | - | 1384797..1385573 (+) | 777 | WP_015041674.1 | enoyl-CoA hydratase/isomerase family protein | - |
| PV002_RS06680 (PV002_06695) | - | 1385825..1387501 (-) | 1677 | WP_003820458.1 | MFS transporter | - |
| PV002_RS06685 (PV002_06700) | - | 1387696..1389054 (-) | 1359 | WP_010930991.1 | sensor histidine kinase | - |
| PV002_RS06690 (PV002_06705) | - | 1389170..1389859 (-) | 690 | WP_003812762.1 | response regulator transcription factor | - |
| PV002_RS06695 (PV002_06710) | recA | 1390099..1391160 (+) | 1062 | WP_003812760.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37949.30 Da Isoelectric Point: 5.1842
>NTDB_id=792142 PV002_RS06695 WP_003812760.1 1390099..1391160(+) (recA) [Bordetella pertussis strain SA22]
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
Nucleotide
Download Length: 1062 bp
>NTDB_id=792142 PV002_RS06695 WP_003812760.1 1390099..1391160(+) (recA) [Bordetella pertussis strain SA22]
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
Similar proteins
Only experimentally validated proteins are listed.