Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PVZ96_RS06770 | Genome accession | NZ_CP118350 |
| Coordinates | 1390213..1391274 (+) | Length | 353 a.a. |
| NCBI ID | WP_003812760.1 | Uniprot ID | K0MEU1 |
| Organism | Bordetella pertussis strain SA16 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1345696..1391274 | 1390213..1391274 | within | 0 |
Gene organization within MGE regions
Location: 1345696..1391274
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVZ96_RS06515 (PVZ96_06530) | - | 1345747..1346550 (+) | 804 | WP_010931015.1 | ABC transporter permease | - |
| PVZ96_RS06520 (PVZ96_06535) | - | 1346552..1348186 (+) | 1635 | WP_010931014.1 | ABC transporter ATP-binding protein | - |
| PVZ96_RS06525 (PVZ96_06540) | - | 1348270..1349331 (+) | 1062 | WP_010931013.1 | LacI family DNA-binding transcriptional regulator | - |
| PVZ96_RS06530 (PVZ96_06545) | - | 1349530..1349799 (+) | 270 | WP_004567322.1 | hypothetical protein | - |
| PVZ96_RS06535 (PVZ96_06550) | - | 1349803..1350327 (+) | 525 | WP_010931012.1 | AlpA family transcriptional regulator | - |
| PVZ96_RS06540 (PVZ96_06555) | - | 1350336..1350668 (-) | 333 | WP_224019493.1 | MerR family DNA-binding protein | - |
| PVZ96_RS06545 (PVZ96_06560) | - | 1350743..1351693 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| PVZ96_RS06550 (PVZ96_06565) | - | 1351690..1352724 (-) | 1035 | WP_010931011.1 | metal-dependent hydrolase | - |
| PVZ96_RS06555 (PVZ96_06570) | - | 1352833..1353471 (+) | 639 | WP_003816758.1 | DedA family protein | - |
| PVZ96_RS06565 (PVZ96_06580) | - | 1353766..1353993 (+) | 228 | WP_019247724.1 | GNAT family N-acetyltransferase | - |
| PVZ96_RS06570 (PVZ96_06585) | - | 1354116..1354829 (+) | 714 | WP_003820420.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| PVZ96_RS06575 (PVZ96_06590) | - | 1355074..1356024 (-) | 951 | WP_005013747.1 | IS481-like element IS481 family transposase | - |
| PVZ96_RS06580 (PVZ96_06595) | - | 1356128..1356409 (+) | 282 | WP_010931009.1 | hypothetical protein | - |
| PVZ96_RS06585 (PVZ96_06600) | - | 1356524..1357972 (-) | 1449 | WP_010931008.1 | PLP-dependent aminotransferase family protein | - |
| PVZ96_RS06590 (PVZ96_06605) | - | 1358083..1359033 (+) | 951 | WP_005012808.1 | IS481-like element IS481 family transposase | - |
| PVZ96_RS06595 (PVZ96_06610) | dut | 1359030..1359479 (-) | 450 | WP_003816756.1 | dUTP diphosphatase | - |
| PVZ96_RS06600 (PVZ96_06615) | - | 1359674..1360624 (+) | 951 | WP_010929584.1 | IS481-like element IS481 family transposase | - |
| PVZ96_RS06605 (PVZ96_06620) | rpmI | 1360960..1361157 (+) | 198 | WP_003812834.1 | 50S ribosomal protein L35 | - |
| PVZ96_RS06610 (PVZ96_06625) | rplT | 1361173..1361532 (+) | 360 | WP_003812832.1 | 50S ribosomal protein L20 | - |
| PVZ96_RS06615 (PVZ96_06630) | pheS | 1361607..1362629 (+) | 1023 | WP_010926359.1 | phenylalanine--tRNA ligase subunit alpha | - |
| PVZ96_RS06620 (PVZ96_06635) | pheT | 1362642..1365059 (+) | 2418 | WP_010931007.1 | phenylalanine--tRNA ligase subunit beta | - |
| PVZ96_RS06625 (PVZ96_06640) | - | 1365065..1365406 (+) | 342 | WP_010931006.1 | integration host factor subunit alpha | - |
| PVZ96_RS06630 (PVZ96_06645) | - | 1365465..1365875 (+) | 411 | WP_003812822.1 | MerR family transcriptional regulator | - |
| PVZ96_RS06640 (PVZ96_06655) | - | 1366375..1367466 (-) | 1092 | WP_010931005.1 | hypothetical protein | - |
| PVZ96_RS06645 (PVZ96_06660) | - | 1367650..1368246 (+) | 597 | WP_010931004.1 | lipoprotein | - |
| PVZ96_RS06650 (PVZ96_06665) | - | 1368346..1368621 (-) | 276 | WP_023852698.1 | hypothetical protein | - |
| PVZ96_RS06655 (PVZ96_06670) | - | 1368639..1369589 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| PVZ96_RS06665 (PVZ96_06680) | - | 1370327..1370659 (+) | 333 | WP_023853503.1 | hypothetical protein | - |
| PVZ96_RS06670 (PVZ96_06685) | - | 1370801..1371541 (-) | 741 | WP_023853497.1 | endonuclease | - |
| PVZ96_RS06675 (PVZ96_06690) | - | 1371717..1371848 (+) | 132 | WP_003812797.1 | entericidin A/B family lipoprotein | - |
| PVZ96_RS06680 (PVZ96_06695) | - | 1371974..1372408 (+) | 435 | WP_010931001.1 | lipoprotein | - |
| PVZ96_RS06685 (PVZ96_06700) | - | 1372410..1372823 (+) | 414 | WP_003820436.1 | membrane protein | - |
| PVZ96_RS06690 (PVZ96_06705) | - | 1372930..1374225 (+) | 1296 | WP_010926366.1 | aspartate carbamoyltransferase | - |
| PVZ96_RS06695 (PVZ96_06710) | - | 1374265..1375164 (-) | 900 | WP_003812788.1 | recombination-associated protein RdgC | - |
| PVZ96_RS06700 | - | 1375318..1375533 (+) | 216 | Protein_1315 | hypothetical protein | - |
| PVZ96_RS06705 (PVZ96_06720) | - | 1375786..1377093 (-) | 1308 | WP_023994674.1 | CaiB/BaiF CoA-transferase family protein | - |
| PVZ96_RS06710 (PVZ96_06725) | - | 1377110..1377997 (-) | 888 | WP_010930998.1 | LysR substrate-binding domain-containing protein | - |
| PVZ96_RS06715 (PVZ96_06730) | - | 1378213..1379376 (+) | 1164 | WP_010930997.1 | hypothetical protein | - |
| PVZ96_RS06720 (PVZ96_06735) | - | 1379384..1379776 (+) | 393 | WP_010930996.1 | Zn-ribbon domain-containing OB-fold protein | - |
| PVZ96_RS06725 (PVZ96_06740) | - | 1379777..1380220 (+) | 444 | WP_003820449.1 | MaoC/PaaZ C-terminal domain-containing protein | - |
| PVZ96_RS06730 (PVZ96_06745) | - | 1380221..1380967 (+) | 747 | WP_010930995.1 | SDR family oxidoreductase | - |
| PVZ96_RS06735 (PVZ96_06750) | - | 1381005..1382042 (+) | 1038 | WP_004567469.1 | ABC transporter substrate-binding protein | - |
| PVZ96_RS06740 (PVZ96_06755) | - | 1382071..1383822 (+) | 1752 | WP_010930994.1 | iron ABC transporter permease | - |
| PVZ96_RS06745 (PVZ96_06760) | - | 1383819..1384883 (+) | 1065 | WP_010930993.1 | ABC transporter ATP-binding protein | - |
| PVZ96_RS06750 (PVZ96_06765) | - | 1384911..1385687 (+) | 777 | WP_015041674.1 | enoyl-CoA hydratase/isomerase family protein | - |
| PVZ96_RS06755 (PVZ96_06770) | - | 1385939..1387615 (-) | 1677 | WP_003820458.1 | MFS transporter | - |
| PVZ96_RS06760 (PVZ96_06775) | - | 1387810..1389168 (-) | 1359 | WP_010930991.1 | sensor histidine kinase | - |
| PVZ96_RS06765 (PVZ96_06780) | - | 1389284..1389973 (-) | 690 | WP_003812762.1 | response regulator transcription factor | - |
| PVZ96_RS06770 (PVZ96_06785) | recA | 1390213..1391274 (+) | 1062 | WP_003812760.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37949.30 Da Isoelectric Point: 5.1842
>NTDB_id=792077 PVZ96_RS06770 WP_003812760.1 1390213..1391274(+) (recA) [Bordetella pertussis strain SA16]
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
Nucleotide
Download Length: 1062 bp
>NTDB_id=792077 PVZ96_RS06770 WP_003812760.1 1390213..1391274(+) (recA) [Bordetella pertussis strain SA16]
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
Similar proteins
Only experimentally validated proteins are listed.