Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PVZ88_RS06770 | Genome accession | NZ_CP118342 |
| Coordinates | 1390212..1391273 (+) | Length | 353 a.a. |
| NCBI ID | WP_003812760.1 | Uniprot ID | K0MEU1 |
| Organism | Bordetella pertussis strain SA8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1345695..1391273 | 1390212..1391273 | within | 0 |
Gene organization within MGE regions
Location: 1345695..1391273
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVZ88_RS06515 (PVZ88_06530) | - | 1345746..1346549 (+) | 804 | WP_010931015.1 | ABC transporter permease | - |
| PVZ88_RS06520 (PVZ88_06535) | - | 1346551..1348185 (+) | 1635 | WP_010931014.1 | ABC transporter ATP-binding protein | - |
| PVZ88_RS06525 (PVZ88_06540) | - | 1348269..1349330 (+) | 1062 | WP_010931013.1 | LacI family DNA-binding transcriptional regulator | - |
| PVZ88_RS06530 (PVZ88_06545) | - | 1349529..1349798 (+) | 270 | WP_004567322.1 | hypothetical protein | - |
| PVZ88_RS06535 (PVZ88_06550) | - | 1349802..1350326 (+) | 525 | WP_010931012.1 | AlpA family transcriptional regulator | - |
| PVZ88_RS06540 (PVZ88_06555) | - | 1350335..1350667 (-) | 333 | WP_224019493.1 | MerR family DNA-binding protein | - |
| PVZ88_RS06545 (PVZ88_06560) | - | 1350742..1351692 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| PVZ88_RS06550 (PVZ88_06565) | - | 1351689..1352723 (-) | 1035 | WP_010931011.1 | metal-dependent hydrolase | - |
| PVZ88_RS06555 (PVZ88_06570) | - | 1352832..1353470 (+) | 639 | WP_003816758.1 | DedA family protein | - |
| PVZ88_RS06565 (PVZ88_06580) | - | 1353765..1353992 (+) | 228 | WP_019247724.1 | GNAT family N-acetyltransferase | - |
| PVZ88_RS06570 (PVZ88_06585) | - | 1354115..1354828 (+) | 714 | WP_003820420.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| PVZ88_RS06575 (PVZ88_06590) | - | 1355073..1356023 (-) | 951 | WP_005013747.1 | IS481-like element IS481 family transposase | - |
| PVZ88_RS06580 (PVZ88_06595) | - | 1356127..1356408 (+) | 282 | WP_010931009.1 | hypothetical protein | - |
| PVZ88_RS06585 (PVZ88_06600) | - | 1356523..1357971 (-) | 1449 | WP_010931008.1 | PLP-dependent aminotransferase family protein | - |
| PVZ88_RS06590 (PVZ88_06605) | - | 1358082..1359032 (+) | 951 | WP_005012808.1 | IS481-like element IS481 family transposase | - |
| PVZ88_RS06595 (PVZ88_06610) | dut | 1359029..1359478 (-) | 450 | WP_003816756.1 | dUTP diphosphatase | - |
| PVZ88_RS06600 (PVZ88_06615) | - | 1359673..1360623 (+) | 951 | WP_010929584.1 | IS481-like element IS481 family transposase | - |
| PVZ88_RS06605 (PVZ88_06620) | rpmI | 1360959..1361156 (+) | 198 | WP_003812834.1 | 50S ribosomal protein L35 | - |
| PVZ88_RS06610 (PVZ88_06625) | rplT | 1361172..1361531 (+) | 360 | WP_003812832.1 | 50S ribosomal protein L20 | - |
| PVZ88_RS06615 (PVZ88_06630) | pheS | 1361606..1362628 (+) | 1023 | WP_010926359.1 | phenylalanine--tRNA ligase subunit alpha | - |
| PVZ88_RS06620 (PVZ88_06635) | pheT | 1362641..1365058 (+) | 2418 | WP_010931007.1 | phenylalanine--tRNA ligase subunit beta | - |
| PVZ88_RS06625 (PVZ88_06640) | - | 1365064..1365405 (+) | 342 | WP_010931006.1 | integration host factor subunit alpha | - |
| PVZ88_RS06630 (PVZ88_06645) | - | 1365464..1365874 (+) | 411 | WP_003812822.1 | MerR family transcriptional regulator | - |
| PVZ88_RS06640 (PVZ88_06655) | - | 1366374..1367465 (-) | 1092 | WP_010931005.1 | hypothetical protein | - |
| PVZ88_RS06645 (PVZ88_06660) | - | 1367649..1368245 (+) | 597 | WP_010931004.1 | lipoprotein | - |
| PVZ88_RS06650 (PVZ88_06665) | - | 1368345..1368620 (-) | 276 | WP_023852698.1 | hypothetical protein | - |
| PVZ88_RS06655 (PVZ88_06670) | - | 1368638..1369588 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| PVZ88_RS06665 (PVZ88_06680) | - | 1370326..1370658 (+) | 333 | WP_023853503.1 | hypothetical protein | - |
| PVZ88_RS06670 (PVZ88_06685) | - | 1370800..1371540 (-) | 741 | WP_023853497.1 | endonuclease | - |
| PVZ88_RS06675 (PVZ88_06690) | - | 1371716..1371847 (+) | 132 | WP_003812797.1 | entericidin A/B family lipoprotein | - |
| PVZ88_RS06680 (PVZ88_06695) | - | 1371973..1372407 (+) | 435 | WP_010931001.1 | lipoprotein | - |
| PVZ88_RS06685 (PVZ88_06700) | - | 1372409..1372822 (+) | 414 | WP_003820436.1 | membrane protein | - |
| PVZ88_RS06690 (PVZ88_06705) | - | 1372929..1374224 (+) | 1296 | WP_010926366.1 | aspartate carbamoyltransferase | - |
| PVZ88_RS06695 (PVZ88_06710) | - | 1374264..1375163 (-) | 900 | WP_003812788.1 | recombination-associated protein RdgC | - |
| PVZ88_RS06700 | - | 1375317..1375532 (+) | 216 | Protein_1315 | hypothetical protein | - |
| PVZ88_RS06705 (PVZ88_06720) | - | 1375785..1377092 (-) | 1308 | WP_023994674.1 | CaiB/BaiF CoA-transferase family protein | - |
| PVZ88_RS06710 (PVZ88_06725) | - | 1377109..1377996 (-) | 888 | WP_010930998.1 | LysR substrate-binding domain-containing protein | - |
| PVZ88_RS06715 (PVZ88_06730) | - | 1378212..1379375 (+) | 1164 | WP_010930997.1 | hypothetical protein | - |
| PVZ88_RS06720 (PVZ88_06735) | - | 1379383..1379775 (+) | 393 | WP_010930996.1 | Zn-ribbon domain-containing OB-fold protein | - |
| PVZ88_RS06725 (PVZ88_06740) | - | 1379776..1380219 (+) | 444 | WP_003820449.1 | MaoC/PaaZ C-terminal domain-containing protein | - |
| PVZ88_RS06730 (PVZ88_06745) | - | 1380220..1380966 (+) | 747 | WP_010930995.1 | SDR family oxidoreductase | - |
| PVZ88_RS06735 (PVZ88_06750) | - | 1381004..1382041 (+) | 1038 | WP_004567469.1 | ABC transporter substrate-binding protein | - |
| PVZ88_RS06740 (PVZ88_06755) | - | 1382070..1383821 (+) | 1752 | WP_010930994.1 | iron ABC transporter permease | - |
| PVZ88_RS06745 (PVZ88_06760) | - | 1383818..1384882 (+) | 1065 | WP_010930993.1 | ABC transporter ATP-binding protein | - |
| PVZ88_RS06750 (PVZ88_06765) | - | 1384910..1385686 (+) | 777 | WP_015041674.1 | enoyl-CoA hydratase/isomerase family protein | - |
| PVZ88_RS06755 (PVZ88_06770) | - | 1385938..1387614 (-) | 1677 | WP_003820458.1 | MFS transporter | - |
| PVZ88_RS06760 (PVZ88_06775) | - | 1387809..1389167 (-) | 1359 | WP_010930991.1 | sensor histidine kinase | - |
| PVZ88_RS06765 (PVZ88_06780) | - | 1389283..1389972 (-) | 690 | WP_003812762.1 | response regulator transcription factor | - |
| PVZ88_RS06770 (PVZ88_06785) | recA | 1390212..1391273 (+) | 1062 | WP_003812760.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37949.30 Da Isoelectric Point: 5.1842
>NTDB_id=791973 PVZ88_RS06770 WP_003812760.1 1390212..1391273(+) (recA) [Bordetella pertussis strain SA8]
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
Nucleotide
Download Length: 1062 bp
>NTDB_id=791973 PVZ88_RS06770 WP_003812760.1 1390212..1391273(+) (recA) [Bordetella pertussis strain SA8]
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
Similar proteins
Only experimentally validated proteins are listed.