Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PUV54_RS10325 Genome accession   NZ_CP118166
Coordinates   2155286..2156371 (+) Length   361 a.a.
NCBI ID   WP_274492154.1    Uniprot ID   A0AAE9ZA38
Organism   Hyphococcus flavus strain MCCC 1K03223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150286..2161371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV54_RS10310 (PUV54_10310) - 2152172..2153119 (+) 948 WP_274492151.1 hypothetical protein -
  PUV54_RS10315 (PUV54_10315) - 2153893..2154708 (+) 816 WP_274492152.1 HNH endonuclease -
  PUV54_RS10320 (PUV54_10320) - 2154907..2155047 (+) 141 WP_274492153.1 hypothetical protein -
  PUV54_RS10325 (PUV54_10325) recA 2155286..2156371 (+) 1086 WP_274492154.1 recombinase RecA Machinery gene
  PUV54_RS10330 (PUV54_10330) - 2156508..2156876 (+) 369 WP_274492155.1 VOC family protein -
  PUV54_RS10335 (PUV54_10335) alaS 2157001..2159658 (+) 2658 WP_274492156.1 alanine--tRNA ligase -
  PUV54_RS10340 (PUV54_10340) - 2159655..2160293 (-) 639 WP_274492157.1 head GIN domain-containing protein -
  PUV54_RS10345 (PUV54_10345) - 2160368..2161030 (-) 663 WP_274492158.1 head GIN domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38490.82 Da        Isoelectric Point: 4.7074

>NTDB_id=790926 PUV54_RS10325 WP_274492154.1 2155286..2156371(+) (recA) [Hyphococcus flavus strain MCCC 1K03223]
MIKGGLRVVEAGDVDKSKALESAISQIDKAFGKGSLMRLGDREVVDMEAISTGSLGLDIALGIGGLPKGRVVEIYGPESS
GKTTLALHVAAETQKQGGTAAFIDAEHALDPVYAGKLGVNLDDLLISQPDTGEQALEIADTLVRSGAIDLLVIDSVAALT
PRAELEGEMGDSLPGLQARLMSQALRKLTGSISRSNCLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGA
IKNRDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGVSKMGEILDLGVKAEVVEKSGSWFSYNSERIGQGRENAKQFLK
DHPDMAAEIERAIRQNAGLIAEDMLTGGEENDDSAETAEAS

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=790926 PUV54_RS10325 WP_274492154.1 2155286..2156371(+) (recA) [Hyphococcus flavus strain MCCC 1K03223]
ATGATCAAAGGCGGTTTGCGTGTTGTGGAGGCGGGCGACGTGGATAAGTCAAAGGCGCTGGAATCAGCGATTTCCCAGAT
AGACAAGGCGTTCGGCAAGGGCTCGCTCATGCGCCTCGGCGACCGCGAGGTGGTCGATATGGAGGCGATTTCGACCGGCT
CCCTCGGCCTCGATATCGCGCTCGGCATCGGCGGGCTTCCCAAGGGGCGTGTCGTTGAAATCTACGGGCCGGAAAGTTCC
GGCAAGACGACCCTGGCGCTGCATGTGGCCGCCGAAACCCAGAAACAGGGCGGCACCGCCGCCTTTATCGACGCCGAACA
TGCGCTCGACCCGGTTTACGCCGGCAAGCTTGGCGTCAATCTCGACGATCTTCTGATTTCACAGCCCGACACTGGCGAGC
AGGCGCTTGAGATTGCCGACACGCTGGTGCGCTCCGGCGCGATCGACTTGCTGGTCATCGACTCCGTTGCGGCGCTGACG
CCGCGTGCGGAGCTTGAGGGCGAGATGGGCGACTCGCTTCCCGGTCTTCAGGCGCGGTTGATGAGCCAGGCGCTCCGTAA
GCTGACGGGTTCGATCTCGCGCTCCAATTGTCTCGTGGTCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCG
GCTCGCCGGAAACGACGACCGGCGGCAATGCGCTGAAGTTTTATTCCTCCGTGCGTCTCGACATCCGCCGTATCGGCGCG
ATCAAGAACAGGGACGAGGTTGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAAAACAAGGTGGCGCCGCCGTTCAAGCA
GGTGGAATTCGACATCATGTATGGCGAGGGCGTCTCCAAGATGGGCGAAATTCTCGATCTCGGCGTCAAGGCCGAGGTGG
TTGAGAAATCCGGCTCTTGGTTTTCCTATAATTCCGAACGGATCGGTCAGGGCCGGGAAAACGCCAAGCAGTTCCTCAAA
GACCATCCGGATATGGCTGCCGAGATTGAGCGGGCCATTCGCCAGAACGCCGGGCTCATCGCTGAGGATATGCTCACCGG
CGGCGAAGAGAACGACGACAGCGCGGAAACCGCCGAGGCGTCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.089

90.582

0.662
  recA Acinetobacter baumannii D1279779

67.857

93.075

0.632
  recA Acinetobacter baylyi ADP1

65.517

96.399

0.632
  recA Neisseria gonorrhoeae MS11

65.607

95.845

0.629
  recA Neisseria gonorrhoeae MS11

65.607

95.845

0.629
  recA Neisseria gonorrhoeae strain FA1090

65.607

95.845

0.629
  recA Glaesserella parasuis strain SC1401

66.276

94.46

0.626
  recA Pseudomonas stutzeri DSM 10701

69.876

89.197

0.623
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.964

93.075

0.623
  recA Vibrio cholerae strain A1552

66.964

93.075

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

90.582

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

94.46

0.601
  recA Helicobacter pylori strain NCTC11637

66.055

90.582

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

61.429

96.953

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

65.846

90.028

0.593
  recA Helicobacter pylori 26695

65.443

90.582

0.593
  recA Streptococcus pyogenes NZ131

58.571

96.953

0.568
  recA Lactococcus lactis subsp. cremoris KW2

60.423

91.69

0.554
  recA Streptococcus mitis SK321

60.606

91.413

0.554
  recA Streptococcus mitis NCTC 12261

60.303

91.413

0.551
  recA Streptococcus pneumoniae D39

60

91.413

0.548
  recA Streptococcus pneumoniae Rx1

60

91.413

0.548
  recA Streptococcus pneumoniae R6

60

91.413

0.548
  recA Streptococcus pneumoniae TIGR4

60

91.413

0.548
  recA Streptococcus mutans UA159

59.459

92.244

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.025

87.535

0.543