Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PTQ19_RS06075 Genome accession   NZ_CP118100
Coordinates   1334206..1335249 (+) Length   347 a.a.
NCBI ID   WP_179411088.1    Uniprot ID   A0A939DWW7
Organism   Microbacterium esteraromaticum strain DEHP-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329206..1340249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTQ19_RS06050 (PTQ19_06050) - 1329464..1332190 (+) 2727 WP_274368816.1 DNA translocase FtsK -
  PTQ19_RS06055 (PTQ19_06055) pgsA 1332190..1332762 (+) 573 WP_274368817.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PTQ19_RS06060 (PTQ19_06060) - 1332759..1333241 (+) 483 WP_274368818.1 nicotinamide-nucleotide amidohydrolase family protein -
  PTQ19_RS06065 (PTQ19_06065) - 1333416..1333724 (+) 309 WP_179411090.1 helix-turn-helix transcriptional regulator -
  PTQ19_RS06070 (PTQ19_06070) - 1333740..1333961 (+) 222 WP_274368819.1 DUF3046 domain-containing protein -
  PTQ19_RS06075 (PTQ19_06075) recA 1334206..1335249 (+) 1044 WP_179411088.1 recombinase RecA Machinery gene
  PTQ19_RS06080 (PTQ19_06080) - 1335255..1336043 (+) 789 WP_274368820.1 regulatory protein RecX -
  PTQ19_RS06085 (PTQ19_06085) miaB 1336110..1337660 (+) 1551 WP_274368821.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PTQ19_RS06090 (PTQ19_06090) miaA 1337666..1338574 (+) 909 WP_274369040.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  PTQ19_RS06095 (PTQ19_06095) - 1338612..1339142 (+) 531 WP_274368822.1 dihydrofolate reductase family protein -
  PTQ19_RS06100 (PTQ19_06100) dapF 1339152..1340024 (+) 873 WP_179411083.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37340.53 Da        Isoelectric Point: 5.5242

>NTDB_id=790161 PTQ19_RS06075 WP_179411088.1 1334206..1335249(+) (recA) [Microbacterium esteraromaticum strain DEHP-1]
MPSTDDREKALDSALAHIERQFGKGSIMRLGSEERAPVEIIPTGSIALDSALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYARKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGDM
GDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGSWYTYDGDQLGQGKENARNFLRNNDDIALAI
EEQIKQKLGIGVKAEAPADELAERRPA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=790161 PTQ19_RS06075 WP_179411088.1 1334206..1335249(+) (recA) [Microbacterium esteraromaticum strain DEHP-1]
ATGCCATCCACCGACGACCGCGAGAAGGCCCTGGATTCCGCTCTCGCGCACATCGAGCGCCAGTTCGGCAAGGGATCGAT
CATGCGACTGGGCAGCGAAGAGCGCGCACCCGTCGAGATCATCCCGACCGGATCCATCGCGCTGGACAGCGCCCTCGGAA
TCGGAGGGCTGCCCCGCGGGCGCATCATCGAGATCTACGGTCCGGAATCGTCCGGTAAGACCACGTTGACCCTGCACGCG
ATCGCCAACGCGCAGCGCGCCGGTGGTATCGCCGCCTTCATCGACGCTGAGCACGCGCTCGACCCCGAGTACGCACGCAA
GCTCGGCGTCGACATCGATCAGCTGCTGGTCTCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGCTCCGGAGCCATCGACCTGGTCGTGATCGACTCCGTCGCCGCGCTGGTGCCCGAGGCTGAGATCAAGGGCGACATG
GGTGATTCGCACGTCGGTCTGCAGGCTCGACTGATGTCGCAGGCGCTGCGAAAGCTCACTGGTGGGCTGAACCAGACGAA
GACCACCGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTGTTCTTCGGCTCTCCCGAGACCACCGCGGGTGGAA
AGGCGCTGAAGTTCTACGCGTCGGTACGCCTCGACATCCGCCGCATCGAGACACTGAAGGATGGCACCGAGGCGGTCGGA
AACCGCACCAGGGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGT
CGGCATCTCGCGCGAAGGCAGCCTGATCGATTTCGGCGTCGAGCACGGCATCGTGAAGAAGTCCGGATCGTGGTACACCT
ACGACGGGGATCAGCTCGGACAGGGCAAGGAGAATGCCCGGAACTTCTTGCGCAACAACGACGACATCGCCCTGGCGATC
GAAGAGCAGATCAAGCAGAAGCTCGGTATCGGAGTCAAGGCTGAAGCGCCGGCCGATGAGCTCGCCGAGCGTCGCCCGGC
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.923

93.66

0.646
  recA Neisseria gonorrhoeae MS11

64.058

99.424

0.637
  recA Neisseria gonorrhoeae MS11

64.058

99.424

0.637
  recA Neisseria gonorrhoeae strain FA1090

64.058

99.424

0.637
  recA Pseudomonas stutzeri DSM 10701

64.327

98.559

0.634
  recA Acinetobacter baylyi ADP1

63.743

98.559

0.628
  recA Acinetobacter baumannii D1279779

66.667

93.372

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.741

93.372

0.614
  recA Vibrio cholerae strain A1552

65.741

93.372

0.614
  recA Streptococcus mitis SK321

61.272

99.712

0.611
  recA Ralstonia pseudosolanacearum GMI1000

67.412

90.202

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

62.018

97.118

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

94.236

0.602
  recA Streptococcus pneumoniae Rx1

63.222

94.813

0.599
  recA Streptococcus pneumoniae TIGR4

63.222

94.813

0.599
  recA Streptococcus pneumoniae D39

63.222

94.813

0.599
  recA Streptococcus pneumoniae R6

63.222

94.813

0.599
  recA Streptococcus mitis NCTC 12261

63.03

95.101

0.599
  recA Glaesserella parasuis strain SC1401

63.272

93.372

0.591
  recA Lactococcus lactis subsp. cremoris KW2

62.006

94.813

0.588
  recA Helicobacter pylori 26695

61.818

95.101

0.588
  recA Helicobacter pylori strain NCTC11637

61.818

95.101

0.588
  recA Streptococcus pyogenes NZ131

61.818

95.101

0.588
  recA Streptococcus mutans UA159

61.818

95.101

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.212

95.101

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.101

0.553