Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PTI97_RS07855 Genome accession   NZ_CP118099
Coordinates   1524337..1525386 (-) Length   349 a.a.
NCBI ID   WP_074033216.1    Uniprot ID   -
Organism   Exiguobacterium marinum strain a-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1519337..1530386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTI97_RS07835 (PTI97_07835) tdh 1520214..1521290 (-) 1077 WP_274356181.1 L-threonine 3-dehydrogenase -
  PTI97_RS07840 (PTI97_07840) - 1521457..1521717 (-) 261 WP_026825833.1 stage V sporulation protein S -
  PTI97_RS07845 (PTI97_07845) - 1521744..1522538 (-) 795 WP_026825832.1 TIGR00282 family metallophosphoesterase -
  PTI97_RS07850 (PTI97_07850) rny 1522587..1524149 (-) 1563 WP_214701920.1 ribonuclease Y -
  PTI97_RS07855 (PTI97_07855) recA 1524337..1525386 (-) 1050 WP_074033216.1 recombinase RecA Machinery gene
  PTI97_RS07860 (PTI97_07860) - 1525463..1526689 (-) 1227 WP_214701918.1 competence/damage-inducible protein A -
  PTI97_RS07865 (PTI97_07865) pgsA 1526752..1527330 (-) 579 WP_026825828.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PTI97_RS07870 (PTI97_07870) - 1527363..1528235 (-) 873 WP_026825827.1 helix-turn-helix domain-containing protein -
  PTI97_RS07875 (PTI97_07875) - 1528263..1529039 (-) 777 WP_012726484.1 YmfK family protein -
  PTI97_RS07880 (PTI97_07880) ymfI 1529133..1529846 (-) 714 WP_274356182.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37946.08 Da        Isoelectric Point: 4.9217

>NTDB_id=790142 PTI97_RS07855 WP_074033216.1 1524337..1525386(-) (recA) [Exiguobacterium marinum strain a-1]
MSDRKQALEMALRQIEKQFGKGSIMRLGENTDQQVSVIPSGSIALDVALGAGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQKRGGQAAFVDAEHALDPKYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGQDMVGNRT
KIKIVKNKIAPPFKTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSFNEERLGQGRENAKQYMKENPAIAAEVERQ
IRDHYGLNGEKTVTVEGEDDEVLSLLDDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=790142 PTI97_RS07855 WP_074033216.1 1524337..1525386(-) (recA) [Exiguobacterium marinum strain a-1]
ATGAGTGATCGTAAACAAGCGTTAGAAATGGCATTGCGCCAGATTGAAAAACAATTCGGTAAAGGCTCGATTATGCGCCT
TGGTGAAAATACAGACCAACAAGTGTCGGTCATCCCTTCAGGGTCAATCGCTCTCGATGTCGCGCTCGGAGCAGGTGGAT
ATCCACGTGGTCGTGTCATTGAAGTATACGGACCAGAATCTTCAGGTAAGACGACTGTCGCCCTTCATGCGATTGCGGAA
GTTCAAAAACGCGGAGGTCAAGCTGCATTCGTCGATGCCGAGCATGCGCTCGATCCGAAGTATGCTAAAAACCTTGGTGT
CAACATCGATGAGTTGCTTCTCTCTCAACCGGATACAGGGGAGCAGGCGCTTGAGATCGCTGAAGCGCTCGTTCGCTCTG
GTGCGGTTGATATCCTTGTTGTCGACTCGGTTGCGGCACTCGTACCAAAAGCCGAAATCGAAGGGGAAATGGGAGATTCA
CACGTTGGTCTTCAAGCCCGCTTGATGTCTCAGGCACTTCGTAAGCTGTCTGGTGCGACGAACAAGTCGAAGACGATTGT
GATCTTCATCAACCAAATCCGTGAGAAGATCGGTATCATGTTCGGTAACCCGGAAACGACCCCAGGTGGTCGCGCCTTGA
AGTTCTACTCTTCGGTGCGTCTTGAAGTTCGTCGTGCAGAAACACTCAAACAAGGTCAAGATATGGTCGGGAACCGTACG
AAGATCAAGATTGTTAAAAACAAGATTGCGCCACCATTCAAAACGGCAGAAGTCGATATCATGTATGGAGAAGGGATCTC
ACGTGAAGGGGAACTCATCGACATCGGTGCAGACCTCGATATCGTTCAAAAGAGTGGAGCTTGGTATTCATTCAATGAGG
AACGTCTCGGTCAAGGCCGTGAGAACGCGAAGCAGTACATGAAAGAAAACCCAGCAATCGCTGCTGAGGTGGAACGACAA
ATTCGCGACCACTACGGCTTGAACGGAGAAAAAACGGTCACAGTCGAAGGAGAAGACGACGAAGTTCTCTCACTTCTTGA
TGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.982

95.415

0.782
  recA Latilactobacillus sakei subsp. sakei 23K

70.029

99.427

0.696
  recA Streptococcus mitis SK321

66.763

99.14

0.662
  recA Streptococcus mutans UA159

66.379

99.713

0.662
  recA Streptococcus pneumoniae Rx1

68.182

94.556

0.645
  recA Streptococcus mitis NCTC 12261

68.182

94.556

0.645
  recA Streptococcus pneumoniae D39

68.182

94.556

0.645
  recA Streptococcus pneumoniae R6

68.182

94.556

0.645
  recA Streptococcus pneumoniae TIGR4

68.182

94.556

0.645
  recA Streptococcus pyogenes NZ131

67.988

93.983

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.824

97.421

0.622
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.556

0.622
  recA Neisseria gonorrhoeae MS11

62.757

97.708

0.613
  recA Neisseria gonorrhoeae strain FA1090

62.757

97.708

0.613
  recA Neisseria gonorrhoeae MS11

62.757

97.708

0.613
  recA Acinetobacter baumannii D1279779

61.919

98.567

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

91.977

0.602
  recA Vibrio cholerae strain A1552

65.421

91.977

0.602
  recA Acinetobacter baylyi ADP1

59.77

99.713

0.596
  recA Ralstonia pseudosolanacearum GMI1000

63.303

93.696

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

93.696

0.582
  recA Helicobacter pylori strain NCTC11637

61.702

94.269

0.582
  recA Helicobacter pylori 26695

61.702

94.269

0.582
  recA Glaesserella parasuis strain SC1401

60.119

96.275

0.579
  recA Pseudomonas stutzeri DSM 10701

62.813

91.691

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.55

0.562