Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PUW42_RS02160 Genome accession   NZ_CP118095
Coordinates   459998..461128 (+) Length   376 a.a.
NCBI ID   WP_060777024.1    Uniprot ID   A0A0X8F8K9
Organism   Aerococcus christensenii strain VSI03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 454998..466128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW42_RS02145 (PUW42_02145) - 456236..457861 (+) 1626 WP_060936368.1 peptide ABC transporter substrate-binding protein -
  PUW42_RS02150 (PUW42_02150) pgsA 458012..458593 (+) 582 WP_274981004.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PUW42_RS02155 (PUW42_02155) - 458663..459910 (+) 1248 WP_274981005.1 competence/damage-inducible protein A -
  PUW42_RS02160 (PUW42_02160) recA 459998..461128 (+) 1131 WP_060777024.1 recombinase RecA Machinery gene
  PUW42_RS02165 (PUW42_02165) - 461297..461869 (+) 573 WP_274981006.1 GNAT family N-acetyltransferase -
  PUW42_RS02170 (PUW42_02170) - 461963..462505 (-) 543 WP_231723613.1 TIGR01440 family protein -
  PUW42_RS02175 (PUW42_02175) - 462611..463309 (-) 699 Protein_400 TatD family hydrolase -
  PUW42_RS02180 (PUW42_02180) - 463346..463645 (-) 300 WP_060777028.1 thiamine-binding protein -
  PUW42_RS02185 (PUW42_02185) - 463945..464601 (-) 657 WP_060936361.1 adaptor protein MecA -
  PUW42_RS02190 (PUW42_02190) spxA 464776..465171 (-) 396 WP_060936360.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40832.00 Da        Isoelectric Point: 4.7080

>NTDB_id=790058 PUW42_RS02160 WP_060777024.1 459998..461128(+) (recA) [Aerococcus christensenii strain VSI03]
MTLSHDENRQKALEQALKKIEKNYGKGAIMKLGEASDIQISTVSTGSLSLDVALGVGGYPRGRIIEVYGPESSGKTTVAL
HAVAEVQKQGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDTGEQGLAIADALVSSGAVDIVVVDSVAALVPRAEIEG
EMGDSHMGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMYGSPETTPGGRALKFYSTIRLDVRRAERIKSGEEI
IGNRTKIKVAKNKVAPPFRVAEVDIMYGEGISREGDLVDLASDMKIIKKSGSWYSYGEDRIGQGRENAKKYLRDHPEVYA
EIDHKVRVAYGFEEETEDEGNLGASTSESDSKKVEKVNEVAPDQEENETLDIFEEE

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=790058 PUW42_RS02160 WP_060777024.1 459998..461128(+) (recA) [Aerococcus christensenii strain VSI03]
ATGACGCTATCACATGACGAGAACCGCCAGAAAGCTTTAGAACAAGCCTTAAAGAAAATAGAAAAAAATTACGGCAAAGG
TGCCATTATGAAATTAGGAGAAGCGAGTGATATTCAAATCTCTACCGTTTCCACCGGCTCGCTTTCCTTAGATGTGGCGC
TAGGCGTTGGAGGGTATCCTCGTGGAAGAATTATTGAAGTCTATGGCCCAGAATCTTCAGGAAAGACAACGGTTGCTCTT
CATGCGGTAGCTGAAGTGCAGAAACAAGGAGGAATCGCTGCTTTTATCGACGCTGAAAATGCCTTGGATCCAGAATATGC
CAAAGCTTTGGGGGTTAATATTGATGAACTTTTGCTTTCCCAACCAGATACAGGGGAACAAGGCTTAGCGATTGCAGATG
CCTTGGTCTCTTCAGGTGCTGTGGATATTGTGGTCGTTGACTCTGTTGCAGCGCTTGTTCCACGGGCAGAAATTGAAGGA
GAGATGGGAGATTCCCACATGGGACTTCAGGCCCGCTTGATGTCTCAAGCCCTCCGCAAATTATCTGGTTCGATCAATAA
GACCAAAACCATTGCCATTTTTATTAACCAGATCCGTGAAAAAGTGGGTGTGATGTACGGCAGTCCTGAAACCACGCCTG
GCGGAAGAGCGCTCAAATTCTATTCGACCATTCGTTTAGATGTTCGTCGAGCAGAACGCATCAAGAGTGGAGAAGAAATT
ATCGGTAACCGTACCAAGATCAAAGTGGCTAAGAACAAGGTCGCTCCTCCTTTCCGAGTGGCAGAAGTGGATATTATGTA
CGGGGAAGGAATTTCTCGTGAAGGGGACTTAGTCGACTTAGCTTCGGATATGAAGATTATTAAGAAGAGCGGTTCTTGGT
ATTCTTATGGGGAAGATCGGATTGGACAAGGACGAGAGAACGCTAAGAAATATCTCAGAGATCATCCGGAAGTTTATGCT
GAAATTGACCACAAGGTGCGGGTAGCTTATGGATTTGAAGAAGAAACCGAAGATGAAGGAAATTTGGGAGCTTCAACCTC
TGAGAGTGACTCTAAGAAGGTAGAAAAAGTCAATGAAGTAGCTCCTGACCAAGAAGAAAATGAAACCTTAGATATTTTTG
AAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8F8K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.042

89.628

0.699
  recA Streptococcus mitis SK321

66.577

98.67

0.657
  recA Bacillus subtilis subsp. subtilis str. 168

74.847

86.702

0.649
  recA Streptococcus pyogenes NZ131

68.644

94.149

0.646
  recA Streptococcus mutans UA159

68.258

94.681

0.646
  recA Streptococcus pneumoniae TIGR4

67.036

96.011

0.644
  recA Streptococcus pneumoniae D39

67.036

96.011

0.644
  recA Streptococcus pneumoniae R6

67.036

96.011

0.644
  recA Streptococcus pneumoniae Rx1

67.036

96.011

0.644
  recA Streptococcus mitis NCTC 12261

67.606

94.415

0.638
  recA Lactococcus lactis subsp. cremoris KW2

68.622

90.691

0.622
  recA Neisseria gonorrhoeae MS11

63.314

89.894

0.569
  recA Neisseria gonorrhoeae MS11

63.314

89.894

0.569
  recA Neisseria gonorrhoeae strain FA1090

63.314

89.894

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.975

85.638

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

88.564

0.545
  recA Vibrio cholerae strain A1552

63.354

85.638

0.543
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

85.638

0.543
  recA Ralstonia pseudosolanacearum GMI1000

65.584

81.915

0.537
  recA Glaesserella parasuis strain SC1401

62.617

85.372

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.182

87.5

0.527
  recA Acinetobacter baylyi ADP1

61.18

85.638

0.524
  recA Helicobacter pylori 26695

58.683

88.83

0.521
  recA Helicobacter pylori strain NCTC11637

58.683

88.83

0.521
  recA Acinetobacter baumannii D1279779

60.559

85.638

0.519
  recA Pseudomonas stutzeri DSM 10701

59.938

85.638

0.513