Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PT602_RS05650 Genome accession   NZ_CP117968
Coordinates   1061077..1062117 (+) Length   346 a.a.
NCBI ID   WP_144159194.1    Uniprot ID   -
Organism   Allobacillus halotolerans strain BCRC 17939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056077..1067117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT602_RS05625 - 1056211..1056459 (+) 249 WP_144159210.1 DUF3243 domain-containing protein -
  PT602_RS05630 - 1057280..1058068 (+) 789 WP_144159207.1 YmfK family protein -
  PT602_RS05635 - 1058087..1059013 (+) 927 WP_144159204.1 helix-turn-helix domain-containing protein -
  PT602_RS05640 pgsA 1059107..1059685 (+) 579 WP_144159201.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PT602_RS05645 - 1059682..1060944 (+) 1263 WP_216687395.1 competence/damage-inducible protein A -
  PT602_RS05650 recA 1061077..1062117 (+) 1041 WP_144159194.1 recombinase RecA Machinery gene
  PT602_RS05655 rny 1062503..1064068 (+) 1566 WP_216687396.1 ribonuclease Y -
  PT602_RS05660 - 1064243..1065040 (+) 798 WP_144160147.1 TIGR00282 family metallophosphoesterase -
  PT602_RS05665 spoVS 1065148..1065408 (+) 261 WP_093855602.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37635.44 Da        Isoelectric Point: 4.6342

>NTDB_id=788611 PT602_RS05650 WP_144159194.1 1061077..1062117(+) (recA) [Allobacillus halotolerans strain BCRC 17939]
MSERKQALDMALKQIEKQFGKGSIMKLGESEGQRVSTVSSGSLSLDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
AQKQGGQAAFIDAEHALDPVYAKNLGVDIDELLLSQPDTGEQALEIAEALVRSGAIDIVVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
RLKVVKNKVAPPFRQAEVDIMYGKGISKEGEVLDLGTDQDIVEKSGSWYSYQGEKLGQGRENAKQFFLDNPDIYESVYDE
LRDAYNISGKEPDEEQAEDQEELDLN

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=788611 PT602_RS05650 WP_144159194.1 1061077..1062117(+) (recA) [Allobacillus halotolerans strain BCRC 17939]
ATGAGTGAGCGTAAACAAGCACTTGATATGGCTTTAAAGCAAATAGAGAAGCAATTTGGTAAAGGTTCCATCATGAAATT
AGGCGAAAGTGAAGGACAGAGAGTTTCAACGGTATCTTCTGGTTCACTAAGTTTAGATATTGCACTTGGTGTTGGCGGTT
ATCCACGCGGAAGAATTGTTGAAATCTATGGTCCAGAATCTTCTGGTAAAACAACTGTTGCTTTGCATGCGATTGCAGAA
GCACAAAAGCAGGGAGGACAAGCAGCATTTATCGATGCGGAGCACGCGCTTGATCCTGTCTATGCGAAGAATCTAGGTGT
AGATATTGATGAATTATTATTATCACAACCAGATACAGGTGAACAAGCACTTGAGATTGCTGAGGCATTAGTCCGTAGTG
GAGCAATCGATATTGTTGTCATTGACTCCGTTGCTGCTTTGGTACCGAAAGCTGAAATTGAGGGAGAGATGGGCGATGCG
CACGTCGGTCTTCAAGCTCGTTTAATGTCCCAGGCATTAAGAAAGCTTTCCGGTGCAATCAATAAGTCGAAAACGACAGC
GATATTCATTAACCAAATTCGTGAAAAAGTAGGCGTAATGTTCGGAAATCCTGAAACAACACCTGGTGGACGGGCATTAA
AATTCTATTCTTCTGTTCGATTAGAAGTTCGACGGGCTGAAACGTTGAAACAAGGTAATGAAATGGTCGGGAACAAAACG
CGTCTTAAAGTCGTTAAGAATAAGGTAGCCCCACCATTCCGTCAAGCTGAAGTGGATATTATGTATGGAAAAGGAATTTC
TAAAGAAGGAGAAGTCCTTGATTTAGGAACGGATCAAGATATCGTCGAGAAAAGCGGGTCATGGTATTCTTATCAAGGCG
AGAAACTTGGACAAGGTAGAGAAAATGCGAAACAATTCTTCTTGGATAATCCAGATATCTATGAAAGCGTGTATGATGAA
TTACGAGATGCCTACAATATATCTGGCAAAGAACCTGATGAGGAACAAGCAGAAGATCAGGAAGAGCTAGATTTAAACTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.569

94.509

0.78
  recA Latilactobacillus sakei subsp. sakei 23K

73.529

98.266

0.723
  recA Streptococcus mitis NCTC 12261

65.805

100

0.662
  recA Streptococcus mitis SK321

65.517

100

0.659
  recA Streptococcus pneumoniae TIGR4

65.607

100

0.656
  recA Streptococcus pneumoniae D39

65.607

100

0.656
  recA Streptococcus pneumoniae R6

65.607

100

0.656
  recA Streptococcus pneumoniae Rx1

65.607

100

0.656
  recA Streptococcus mutans UA159

65.988

99.422

0.656
  recA Streptococcus pyogenes NZ131

67.593

93.642

0.633
  recA Lactococcus lactis subsp. cremoris KW2

66.061

95.376

0.63
  recA Acinetobacter baumannii D1279779

63.006

100

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.049

93.642

0.618
  recA Vibrio cholerae strain A1552

66.049

93.642

0.618
  recA Acinetobacter baylyi ADP1

61.696

98.844

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.202

97.11

0.604
  recA Ralstonia pseudosolanacearum GMI1000

65.924

90.751

0.598
  recA Pseudomonas stutzeri DSM 10701

64.89

92.197

0.598
  recA Neisseria gonorrhoeae strain FA1090

66.452

89.595

0.595
  recA Neisseria gonorrhoeae MS11

66.452

89.595

0.595
  recA Neisseria gonorrhoeae MS11

66.452

89.595

0.595
  recA Glaesserella parasuis strain SC1401

63.975

93.064

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.509

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

93.353

0.578
  recA Helicobacter pylori strain NCTC11637

61.61

93.353

0.575
  recA Helicobacter pylori 26695

61.61

93.353

0.575