Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PQ460_RS14685 Genome accession   NZ_CP117876
Coordinates   3379635..3380702 (-) Length   355 a.a.
NCBI ID   WP_273616285.1    Uniprot ID   A0AAX3M7A8
Organism   Paenibacillus sp. KACC 21273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3374635..3385702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ460_RS14660 (PQ460_14660) - 3374694..3375266 (-) 573 WP_273615823.1 phosphate propanoyltransferase -
  PQ460_RS14665 (PQ460_14665) - 3375545..3375805 (-) 261 WP_017813748.1 stage V sporulation protein S -
  PQ460_RS14670 (PQ460_14670) - 3375962..3376756 (-) 795 WP_273616286.1 TIGR00282 family metallophosphoesterase -
  PQ460_RS14675 (PQ460_14675) rny 3376822..3378363 (-) 1542 WP_069327318.1 ribonuclease Y -
  PQ460_RS14680 (PQ460_14680) - 3378730..3379491 (-) 762 WP_273615822.1 RecX family transcriptional regulator -
  PQ460_RS14685 (PQ460_14685) recA 3379635..3380702 (-) 1068 WP_273616285.1 recombinase RecA Machinery gene
  PQ460_RS14690 (PQ460_14690) - 3381017..3382291 (-) 1275 WP_273615821.1 competence/damage-inducible protein A -
  PQ460_RS14695 (PQ460_14695) pgsA 3382457..3383044 (-) 588 WP_274170290.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PQ460_RS14700 (PQ460_14700) - 3383173..3383661 (-) 489 WP_204824518.1 YajQ family cyclic di-GMP-binding protein -
  PQ460_RS14705 (PQ460_14705) - 3383788..3384852 (-) 1065 WP_273615819.1 helix-turn-helix domain-containing protein -
  PQ460_RS14710 (PQ460_14710) - 3384890..3385657 (-) 768 WP_069327324.1 DUF3388 domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38520.86 Da        Isoelectric Point: 5.2184

>NTDB_id=788208 PQ460_RS14685 WP_273616285.1 3379635..3380702(-) (recA) [Paenibacillus sp. KACC 21273]
MSDRRAALDMALRQIEKQFGKGSVMKLGESTHMQVEVIPSGSIALDIALGTGGMPRGRIIEIYGPESSGKTTVALHAIAE
VQKAGGQAAFIDAEHALDPQYAKNLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIEAIKNGNDVVGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISKEGSLIDIGVEHDIVNKSGAWYSYEGERMGQGRENSKQFLKENPHIADIIEQK
IRVSSNLTTVVEEPSAEEKEKESLEEQELFSKATE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=788208 PQ460_RS14685 WP_273616285.1 3379635..3380702(-) (recA) [Paenibacillus sp. KACC 21273]
TTGTCAGATCGTCGTGCAGCGTTAGATATGGCGCTTCGTCAAATAGAGAAGCAATTCGGTAAAGGTTCAGTTATGAAACT
TGGAGAATCCACTCATATGCAAGTTGAAGTTATTCCTAGTGGATCTATTGCATTAGATATTGCTTTGGGTACAGGCGGTA
TGCCAAGAGGACGTATTATCGAAATATACGGACCAGAATCTTCTGGTAAAACAACTGTAGCGCTTCATGCAATTGCAGAA
GTTCAAAAAGCTGGAGGACAAGCAGCATTTATCGATGCAGAGCATGCTCTAGATCCTCAATATGCTAAAAACTTAGGCGT
TAACATTGATGAATTACTACTTTCTCAACCAGATACAGGTGAGCAAGGTCTAGAAATCGCTGAAGCACTTGTACGTAGTG
GTGCTGTTGATATTATCGTTGTCGATTCTGTAGCAGCATTGGTACCAAAAGCAGAGATCGAAGGCGAAATGGGAGATTCT
CACGTTGGTTTGCAAGCACGTTTGATGTCTCAAGCTTTGCGTAAATTGTCTGGTGCAATCAGTAAATCCAAAACAATCAC
AATCTTTATCAATCAGCTTCGTGAAAAAGTTGGAGTTATGTTTGGTAACCCTGAGACAACTCCAGGTGGTCGTGCACTTA
AATTCTACTCCACTGTACGTTTAGACGTACGTCGTATAGAAGCAATCAAAAACGGTAACGATGTTGTTGGTAACCGTACA
CGTATCAAAGTTGTTAAAAACAAAGTTGCTCCTCCATTCAAACAAGCTGAAGTAGATATCATGTACGGAGAAGGTATCTC
TAAAGAAGGTAGCTTGATCGATATCGGTGTAGAACACGATATTGTAAATAAAAGTGGTGCTTGGTACTCTTACGAAGGTG
AACGTATGGGTCAAGGTCGTGAGAACTCTAAACAATTCTTGAAAGAAAATCCGCATATTGCAGATATCATCGAGCAAAAA
ATTCGTGTATCTAGCAATTTAACAACAGTGGTTGAAGAACCATCTGCTGAAGAAAAAGAAAAAGAGAGTCTTGAAGAGCA
AGAATTATTCTCTAAAGCAACTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.298

90.704

0.746
  recA Latilactobacillus sakei subsp. sakei 23K

72.059

95.775

0.69
  recA Streptococcus mutans UA159

67.042

100

0.67
  recA Streptococcus mitis NCTC 12261

67.63

97.465

0.659
  recA Streptococcus pneumoniae Rx1

66.477

99.155

0.659
  recA Streptococcus pneumoniae TIGR4

66.477

99.155

0.659
  recA Streptococcus pneumoniae R6

66.477

99.155

0.659
  recA Streptococcus pneumoniae D39

66.477

99.155

0.659
  recA Streptococcus mitis SK321

67.246

97.183

0.654
  recA Streptococcus pyogenes NZ131

70.154

91.549

0.642
  recA Lactococcus lactis subsp. cremoris KW2

67.576

92.958

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

95.775

0.62
  recA Vibrio cholerae strain A1552

64.706

95.775

0.62
  recA Neisseria gonorrhoeae MS11

65.269

94.085

0.614
  recA Neisseria gonorrhoeae MS11

65.269

94.085

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.269

94.085

0.614
  recA Acinetobacter baylyi ADP1

61.538

98.873

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

95.775

0.606
  recA Ralstonia pseudosolanacearum GMI1000

64.939

92.394

0.6
  recA Glaesserella parasuis strain SC1401

60.29

97.183

0.586
  recA Acinetobacter baumannii D1279779

65

90.141

0.586
  recA Pseudomonas stutzeri DSM 10701

63.303

92.113

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

91.831

0.58
  recA Helicobacter pylori strain NCTC11637

62.539

90.986

0.569
  recA Helicobacter pylori 26695

62.229

90.986

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

90.423

0.558