Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PT012_RS00445 Genome accession   NZ_CP117820
Coordinates   117467..118510 (+) Length   347 a.a.
NCBI ID   WP_027700369.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain ICMP 8740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 112467..123510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT012_RS00430 (PT012_00430) - 113348..114376 (-) 1029 WP_004085534.1 right-handed parallel beta-helix repeat-containing protein -
  PT012_RS00435 (PT012_00435) - 115146..116177 (+) 1032 WP_004085533.1 nitronate monooxygenase family protein -
  PT012_RS00440 (PT012_00440) lexA 116650..117285 (+) 636 WP_027700370.1 transcriptional repressor LexA -
  PT012_RS00445 (PT012_00445) recA 117467..118510 (+) 1044 WP_027700369.1 recombinase RecA Machinery gene
  PT012_RS00450 (PT012_00450) alaS 118999..121653 (+) 2655 WP_027700368.1 alanine--tRNA ligase -
  PT012_RS00455 (PT012_00455) csrA 121792..122007 (+) 216 WP_004085529.1 carbon storage regulator CsrA -
  PT012_RS00465 (PT012_00465) - 122902..123030 (-) 129 WP_021358308.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37622.30 Da        Isoelectric Point: 5.0879

>NTDB_id=787760 PT012_RS00445 WP_027700369.1 117467..118510(+) (recA) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
MDENKKRALSVALSQIEKQFGKGSVMRMGDRVIEAVEAIPTGSLMLDLALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKRGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQGKDNARGYLRENPHLAAKL
EADLREKFEPTELSREEGDEDTLEDAM

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=787760 PT012_RS00445 WP_027700369.1 117467..118510(+) (recA) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
ATGGATGAGAACAAGAAACGCGCCCTTTCTGTCGCTTTAAGCCAGATTGAAAAACAGTTCGGCAAGGGGTCCGTGATGCG
GATGGGCGATCGCGTGATCGAAGCCGTAGAGGCGATCCCGACAGGTTCGCTCATGTTGGATCTGGCCCTGGGGATAGGTG
GTTTGCCAAAGGGACGTGTCGTGGAAATCTATGGGCCGGAATCTTCTGGGAAGACCACATTGACTTTGCAGGCGATCGCT
CAATGCCAGAAGAGGGGAGGTACAGCAGCGTTCATTGATGCTGAGCATGCCTTGGATCCGATTTATGCGGGCAAGTTAGG
CGTCAATGTTGATGATTTGTTGTTGTCTCAGCCAGATACTGGGGAGCAGGCTCTGGAAATCGCTGACATGCTGGTGCGCT
CGGGGTCGATCGATATCATGGTTATTGATTCGGTTGCGGCACTCACGCCAAGGGCGGAGATTGAGGGTGAGATGGGAGAT
CAGTTGCCCGGTCTTCAGGCGCGATTGATGAGCCAGGCGCTGCGTAAATTGACCGGCAATATCAAGCGCTCTAATACGCT
GGTGATTTTTATCAACCAGTTGCGTATGAAAATTGGGATCATGATGCCGGGTCAAAGCCCTGAAACTACGACAGGGGGTA
ATGCGCTGAAGTTCTATGCTTCAGTGCGTTTGGATATTCGCCGTATTGGCGCGATCAAGAAGGGTGACGAAATTATCGGG
AATCAAACCAAAATCAAGGTTGTTAAAAACAAGTTGGCGCCTCCCTTCAAACAAGTCGTGACTGAGATTCTCTATGGTGA
AGGCATCAGTCGTGAAGGGGAATTGATTGAAATGGGCGTGGAGGCCAAGTTGGTTGAGAAAGCCGGCGCTTGGTATAGCT
ATGGTGGTGAGCGGATCGGGCAAGGAAAAGATAATGCGCGTGGCTATCTACGCGAAAACCCGCATCTTGCGGCCAAGCTT
GAGGCTGATTTGCGTGAGAAATTTGAGCCGACCGAGCTTTCTCGAGAAGAGGGCGATGAAGATACGCTCGAAGATGCAAT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.145

99.424

0.697
  recA Ralstonia pseudosolanacearum GMI1000

73.03

95.101

0.695
  recA Acinetobacter baumannii D1279779

71.601

95.389

0.683
  recA Pseudomonas stutzeri DSM 10701

71.646

94.524

0.677
  recA Vibrio cholerae strain A1552

70.245

93.948

0.66
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

93.948

0.66
  recA Neisseria gonorrhoeae MS11

66.082

98.559

0.651
  recA Neisseria gonorrhoeae MS11

66.082

98.559

0.651
  recA Neisseria gonorrhoeae strain FA1090

66.082

98.559

0.651
  recA Glaesserella parasuis strain SC1401

68.111

93.084

0.634
  recA Helicobacter pylori strain NCTC11637

61.747

95.677

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.078

96.254

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.438

92.219

0.585
  recA Helicobacter pylori 26695

61.145

95.677

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

59.184

98.847

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.538

93.66

0.576
  recA Streptococcus pneumoniae D39

60.366

94.524

0.571
  recA Streptococcus pneumoniae Rx1

60.366

94.524

0.571
  recA Streptococcus pneumoniae R6

60.366

94.524

0.571
  recA Streptococcus pneumoniae TIGR4

60.366

94.524

0.571
  recA Streptococcus mutans UA159

60

95.101

0.571
  recA Streptococcus pyogenes NZ131

59.697

95.101

0.568
  recA Streptococcus mitis SK321

59.756

94.524

0.565
  recA Streptococcus mitis NCTC 12261

59.451

94.524

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

93.948

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.154

93.66

0.545