Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PQO03_RS10535 Genome accession   NZ_CP117811
Coordinates   2571285..2572331 (+) Length   348 a.a.
NCBI ID   WP_274150217.1    Uniprot ID   -
Organism   Lentisphaera profundi strain SAORIC-696     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2566285..2577331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQO03_RS10515 (PQO03_10515) rpmE 2567361..2567564 (+) 204 WP_274150211.1 50S ribosomal protein L31 -
  PQO03_RS10520 (PQO03_10520) recF 2567622..2568713 (-) 1092 WP_274150213.1 DNA replication/repair protein RecF -
  PQO03_RS10525 (PQO03_10525) dnaN 2568717..2569805 (-) 1089 WP_274150215.1 DNA polymerase III subunit beta -
  PQO03_RS10530 (PQO03_10530) - 2569989..2571197 (+) 1209 WP_274150216.1 nicotinamide-nucleotide amidohydrolase family protein -
  PQO03_RS10535 (PQO03_10535) recA 2571285..2572331 (+) 1047 WP_274150217.1 recombinase RecA Machinery gene
  PQO03_RS10540 (PQO03_10540) hisG 2572629..2573483 (+) 855 WP_274150219.1 ATP phosphoribosyltransferase -
  PQO03_RS10545 (PQO03_10545) mutS 2573484..2575997 (+) 2514 WP_274150221.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37656.07 Da        Isoelectric Point: 6.8594

>NTDB_id=787624 PQO03_RS10535 WP_274150217.1 2571285..2572331(+) (recA) [Lentisphaera profundi strain SAORIC-696]
MAKKDTENKDRERNLSLAISQINKEYGSGAIMKLGDKPHSDVSVISTGALALDMALGVYGMPRGRIIEIYGPESSGKTSV
CLHTIANAQKSGGTCAFIDTEHALDPQYARMIGVNTQDLLVSQPDCGEDALNIAQTLISSNSVDVLVIDSVAALTPRAEL
DGQIGDSHVGLQARLMSSALRSLAGAINKTRTCLIFTNQLREKIGVMYGNPEVTPGGKALKFYASIRLEIRRAAVIQNPA
GEVLGNRVKVKVVKNKIAPPFRKAEFDIMYNEGISRAGSILDVAVELEIISKKGSWFSFEGRQLGQGREQSKDAIKSDEK
LETTILDRVKTILKKDGAPEEEEVNIEA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=787624 PQO03_RS10535 WP_274150217.1 2571285..2572331(+) (recA) [Lentisphaera profundi strain SAORIC-696]
ATGGCTAAAAAAGATACAGAAAACAAAGATCGCGAACGCAACCTCAGTCTTGCTATCAGTCAAATCAACAAGGAATACGG
CAGCGGCGCAATCATGAAGTTAGGCGATAAGCCACATTCAGATGTATCCGTTATATCTACTGGCGCCCTTGCACTAGACA
TGGCACTAGGCGTCTACGGTATGCCACGCGGCCGTATCATCGAAATCTATGGCCCTGAATCATCAGGTAAAACAAGCGTA
TGCTTACATACCATTGCCAATGCACAAAAATCTGGTGGCACATGCGCTTTCATTGATACCGAACATGCTCTTGACCCCCA
ATATGCTCGTATGATCGGAGTCAACACTCAAGACTTGCTCGTTTCACAACCAGATTGCGGTGAAGATGCACTCAACATTG
CCCAAACTTTAATCTCAAGCAACTCTGTTGACGTCCTCGTAATTGACTCCGTCGCAGCACTCACTCCACGAGCTGAACTC
GACGGCCAAATTGGCGATAGCCACGTAGGTTTACAAGCACGCTTAATGTCATCTGCACTTAGAAGCTTAGCAGGTGCGAT
CAACAAAACTCGCACATGCCTTATTTTTACCAACCAATTGCGTGAGAAAATCGGCGTTATGTACGGTAATCCAGAAGTCA
CTCCAGGCGGTAAAGCACTTAAGTTTTATGCTTCAATACGCCTGGAAATCCGTCGTGCTGCAGTCATCCAAAATCCTGCT
GGAGAAGTACTTGGTAACCGTGTCAAAGTTAAAGTTGTTAAAAACAAAATTGCCCCACCTTTCCGCAAAGCTGAATTTGA
TATCATGTACAACGAAGGTATTAGCCGCGCTGGCTCTATCCTCGATGTCGCCGTTGAGCTCGAAATCATCAGTAAAAAAG
GCTCTTGGTTCTCATTCGAAGGACGCCAACTTGGCCAAGGTCGCGAGCAATCAAAAGACGCTATCAAGTCTGATGAAAAA
CTAGAAACCACCATTTTAGATAGAGTAAAAACTATCTTAAAAAAGGATGGTGCACCTGAAGAGGAAGAAGTTAACATCGA
AGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.185

97.989

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

56.395

98.851

0.557
  recA Helicobacter pylori strain NCTC11637

58.462

93.391

0.546
  recA Bacillus subtilis subsp. subtilis str. 168

59.19

92.241

0.546
  recA Helicobacter pylori 26695

58.154

93.391

0.543
  recA Streptococcus mitis NCTC 12261

53.409

100

0.54
  recA Streptococcus pyogenes NZ131

57.276

92.816

0.532
  recA Glaesserella parasuis strain SC1401

52.273

100

0.529
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.683

95.115

0.52
  recA Lactococcus lactis subsp. cremoris KW2

55.556

93.103

0.517
  recA Streptococcus pneumoniae R6

58.497

87.931

0.514
  recA Streptococcus pneumoniae Rx1

58.497

87.931

0.514
  recA Streptococcus mitis SK321

58.497

87.931

0.514
  recA Streptococcus pneumoniae TIGR4

58.497

87.931

0.514
  recA Streptococcus pneumoniae D39

58.497

87.931

0.514
  recA Neisseria gonorrhoeae MS11

54.63

93.103

0.509
  recA Neisseria gonorrhoeae MS11

54.63

93.103

0.509
  recA Neisseria gonorrhoeae strain FA1090

54.63

93.103

0.509
  recA Ralstonia pseudosolanacearum GMI1000

56.731

89.655

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.799

94.54

0.509
  recA Streptococcus mutans UA159

57.19

87.931

0.503
  recA Pseudomonas stutzeri DSM 10701

52.147

93.678

0.489
  recA Acinetobacter baylyi ADP1

53.145

91.379

0.486
  recA Vibrio cholerae O1 biovar El Tor strain E7946

51.84

93.678

0.486
  recA Vibrio cholerae strain A1552

51.84

93.678

0.486
  recA Acinetobacter baumannii D1279779

55.814

86.494

0.483