Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PQG02_RS14155 Genome accession   NZ_CP117768
Coordinates   3048712..3049791 (-) Length   359 a.a.
NCBI ID   WP_273769243.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0926     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3043712..3054791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQG02_RS14145 (PQG02_14420) - 3045166..3046488 (+) 1323 WP_273769241.1 D-alanyl-D-alanine carboxypeptidase -
  PQG02_RS14150 (PQG02_14425) - 3046819..3048033 (+) 1215 WP_273769242.1 HhoA/HhoB/HtrA family serine endopeptidase -
  PQG02_RS14155 (PQG02_14430) recA 3048712..3049791 (-) 1080 WP_273769243.1 recombinase RecA Machinery gene
  PQG02_RS14160 (PQG02_14435) - 3050291..3051844 (+) 1554 WP_273769244.1 HNH endonuclease -
  PQG02_RS14165 (PQG02_14440) - 3052172..3052465 (+) 294 WP_273769245.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  PQG02_RS14170 (PQG02_14445) - 3052452..3052733 (+) 282 WP_273769246.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PQG02_RS14175 (PQG02_14450) xseA 3052794..3054062 (+) 1269 WP_273769247.1 exodeoxyribonuclease VII large subunit -
  PQG02_RS14180 (PQG02_14455) xseB 3054055..3054282 (+) 228 WP_273769248.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38509.93 Da        Isoelectric Point: 4.9742

>NTDB_id=787576 PQG02_RS14155 WP_273769243.1 3048712..3049791(-) (recA) [Nostoc sp. UHCC 0926]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDIHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCIVDLAEETGVLVRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
QIKQLVREKLDKGAVVSANSVAKPSEGEEEEEVDLEPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=787576 PQG02_RS14155 WP_273769243.1 3048712..3049791(-) (recA) [Nostoc sp. UHCC 0926]
ATGGCTATCAACACCGATACTTCTGGCAAGCAAAAAGCGCTGACTATGGTGCTCAACCAGATTGAGCGCAGCTTTGGTAA
AGGAGCAATCATGCGCCTGGGCGATGCCACCCGGATGCGGGTGGAGACGATTTCCAGTGGAGCGCTCACCCTAGATTTAG
CATTGGGTGGTGGTTTACCCAAGGGGCGGGTAATTGAAATTTATGGCCCCGAAAGTTCCGGGAAGACTACAGTAGCGCTA
CATGCGCTCGCCGAAGTGCAAAGAAATGGCGGTATTGCTGCCTTTGTTGATGCTGAACACGCCCTTGACCCTACCTATGC
TGCGGCATTGGGTGTAGATATTGATAATTTGCTGATTTCCCAACCTGACACAGGCGAATCAGCTTTGGAAATTGTCGATC
AGCTTGTTCGGTCTGCTGCGGTTGATATTGTAGTCATTGACTCAGTAGCAGCACTGGTTCCCCGCGCTGAAATTGAAGGG
GATATGGGTGATATTCACGTTGGTCTGCAAGCGCGGTTGATGAGCCAAGCCCTACGTAAGATTACGGGTAATATTGGTAA
ATCTGGTTGCACAGTAATTTTCATTAACCAGTTGCGGCAAAAAATCGGTGTTACCTACGGTAGCCCAGAAACCACGACTG
GAGGTAATGCATTGAAGTTTTACGCTTCGGTGCGCTTGGATATTCGCCGGATTCAAACCTTGAAAAAAGGTACAGATGAA
TTTGGTAACCGCGTCAAAGTCAAAGTCGCCAAAAATAAAGTAGCGCCGCCCTTCAGAATAGCGGAATTTGACATTATTTT
TGGCAAAGGTATTTCTACCTTGGGTTGTATTGTAGACTTGGCAGAAGAAACTGGCGTCCTTGTCCGCAAAGGAGCTTGGT
ATAGTTACAACGGCGATAATATTTCCCAAGGACGAGACAATGCCATTAAGTATCTAGAAGAAAAGCCTGAATTTGCTGAA
CAAATTAAGCAACTGGTGCGTGAAAAGCTAGATAAAGGCGCTGTTGTTTCTGCTAACTCTGTAGCTAAACCCAGTGAAGG
AGAGGAAGAGGAAGAAGTCGATTTAGAGCCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

62.644

96.936

0.607
  recA Acinetobacter baylyi ADP1

62.824

96.657

0.607
  recA Pseudomonas stutzeri DSM 10701

64.583

93.593

0.604
  recA Ralstonia pseudosolanacearum GMI1000

64.923

90.529

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.479

0.582
  recA Glaesserella parasuis strain SC1401

58.621

96.936

0.568
  recA Neisseria gonorrhoeae MS11

63.438

89.136

0.565
  recA Neisseria gonorrhoeae MS11

63.438

89.136

0.565
  recA Neisseria gonorrhoeae strain FA1090

63.438

89.136

0.565
  recA Helicobacter pylori 26695

61.145

92.479

0.565
  recA Helicobacter pylori strain NCTC11637

61.145

92.479

0.565
  recA Streptococcus pneumoniae D39

57.183

98.886

0.565
  recA Streptococcus pneumoniae TIGR4

57.183

98.886

0.565
  recA Streptococcus pneumoniae Rx1

57.183

98.886

0.565
  recA Streptococcus pneumoniae R6

57.183

98.886

0.565
  recA Streptococcus mutans UA159

58.501

96.657

0.565
  recA Vibrio cholerae strain A1552

61.801

89.694

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

89.694

0.554
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.602

95.265

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

61.129

88.858

0.543
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.451

91.365

0.543
  recA Streptococcus pyogenes NZ131

59.509

90.808

0.54
  recA Streptococcus mitis SK321

59.752

89.972

0.538
  recA Streptococcus mitis NCTC 12261

59.752

89.972

0.538
  recA Lactococcus lactis subsp. cremoris KW2

58.824

89.972

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.495

92.201

0.521