Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PGW99_RS05315 Genome accession   NZ_CP117520
Coordinates   1097340..1098392 (-) Length   350 a.a.
NCBI ID   WP_273779165.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1092340..1103392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS05280 - 1092624..1093112 (+) 489 WP_273779160.1 OmpH family outer membrane protein -
  PGW99_RS05285 lpxD 1093116..1094186 (+) 1071 WP_273779161.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  PGW99_RS05290 fabZ 1094194..1094670 (+) 477 WP_273779439.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PGW99_RS05295 lpxA 1094678..1095466 (+) 789 WP_273779162.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  PGW99_RS05300 - 1095537..1096382 (-) 846 WP_273779163.1 YbgF trimerization domain-containing protein -
  PGW99_RS05310 - 1096803..1097288 (-) 486 WP_273779164.1 regulatory protein RecX -
  PGW99_RS05315 recA 1097340..1098392 (-) 1053 WP_273779165.1 recombinase RecA Machinery gene
  PGW99_RS05320 - 1098539..1098979 (-) 441 WP_273779166.1 S4 domain-containing protein -
  PGW99_RS05325 - 1098963..1099652 (-) 690 WP_273779167.1 HAD-IA family hydrolase -
  PGW99_RS05330 - 1099835..1100932 (-) 1098 WP_273779168.1 cation transporter -
  PGW99_RS05335 - 1101269..1102123 (+) 855 WP_273779169.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PGW99_RS05340 - 1102189..1102935 (+) 747 WP_273779170.1 phosphoglycerate mutase family protein -
  PGW99_RS05345 rpsT 1103025..1103294 (-) 270 WP_273779171.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37884.30 Da        Isoelectric Point: 4.8398

>NTDB_id=786224 PGW99_RS05315 WP_273779165.1 1097340..1098392(-) (recA) [Acinetobacter sp. GSS19]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHMGELVDLAVQQDLIQKAGAWYSYQGNKIGQGKNNVIRYLEENLALADEIER
MIRDQLLTSANSAPANAELEDDEQPDFLEG

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=786224 PGW99_RS05315 WP_273779165.1 1097340..1098392(-) (recA) [Acinetobacter sp. GSS19]
ATGGATGAGAATAAGAGTAAAGCGCTGAATGCTGCTTTAAGCCAGATTGAAAAGCAATTTGGTAAAAATACCGTCATGCG
TTTGGGTGATAACACGGTTCAGGCGGTTGAAGCCGTATCAACAGGTTCGCTTACCCTAGATATCGCGTTAGGCATTGGCG
GTTTGCCAAAAGGCCGCATCGTGGAAATCTACGGTCCTGAATCTTCAGGTAAAACCACTATGACTTTGCAAGCAATTGCG
CAATGTCAAAAGGCTGGTGGCACCTGTGCGTTTATCGATGCAGAACATGCACTTGACCCACAATATGCACGTAAACTGGG
TGTCGACATCGACAATCTTCTGGTCTCTCAACCAGACAATGGTGAACAGGCACTAGAAATTGCCGACATGCTAGTTCGTT
CAGGTGCGATTGACCTGATTGTCGTCGACTCCGTGGCCGCCTTGACGCCACGCGCCGAAATTGAAGGCGAAATGGGTGAT
TCCCACATGGGTCTGCAGGCACGCTTGATGAGTCAGGCACTGCGTAAAATCACCGGTAATGCCAAACGTTCTAACTGTAT
GGTAATCTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTTGGTAGCCCCGAAACCACTACTGGTGGTAATGCCC
TGAAGTTCTATGCTTCTGTACGCCTGGATATTCGCCGCGTAGGTCAAGTCAAAGAAGGCGATGAGATTATTGGTTCGGAA
ACCAAAGTTAAAGTCGTGAAAAACAAAATGGCTCCACCATTTAAAGAAGCCCTCTTCCAAATTCTGTATGGCAAAGGGGT
CAACCATATGGGCGAGTTAGTTGATTTAGCGGTACAACAAGATCTAATCCAAAAAGCTGGTGCATGGTACTCTTATCAGG
GCAATAAAATTGGCCAAGGTAAAAACAATGTTATCCGTTACCTAGAAGAAAACCTGGCTTTGGCAGACGAAATTGAACGC
ATGATCCGCGATCAATTGCTAACCTCAGCCAATAGCGCACCTGCGAATGCAGAACTTGAAGATGATGAACAACCTGATTT
TTTAGAAGGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

90.831

99.714

0.906
  recA Acinetobacter baumannii D1279779

90.517

99.429

0.9
  recA Pseudomonas stutzeri DSM 10701

74.128

98.286

0.729
  recA Glaesserella parasuis strain SC1401

70.76

97.714

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.205

94.571

0.683
  recA Vibrio cholerae strain A1552

72.205

94.571

0.683
  recA Ralstonia pseudosolanacearum GMI1000

69.207

93.714

0.649
  recA Neisseria gonorrhoeae MS11

68.519

92.571

0.634
  recA Neisseria gonorrhoeae MS11

68.519

92.571

0.634
  recA Neisseria gonorrhoeae strain FA1090

68.519

92.571

0.634
  recA Streptococcus mutans UA159

60.34

100

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

94.571

0.606
  recA Helicobacter pylori strain NCTC11637

62.687

95.714

0.6
  recA Helicobacter pylori 26695

62.388

95.714

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.429

0.597
  recA Streptococcus pyogenes NZ131

63.077

92.857

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.195

93.714

0.583
  recA Streptococcus pneumoniae D39

62.27

93.143

0.58
  recA Streptococcus mitis NCTC 12261

62.27

93.143

0.58
  recA Streptococcus pneumoniae Rx1

62.27

93.143

0.58
  recA Streptococcus pneumoniae R6

62.27

93.143

0.58
  recA Streptococcus pneumoniae TIGR4

62.27

93.143

0.58
  recA Streptococcus mitis SK321

61.963

93.143

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

60.87

92

0.56
  recA Lactococcus lactis subsp. cremoris KW2

60.062

92.286

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

91.714

0.551