Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PGW97_RS13665 Genome accession   NZ_CP117517
Coordinates   3024299..3025369 (-) Length   356 a.a.
NCBI ID   WP_047886871.1    Uniprot ID   A0A0J1H488
Organism   Photobacterium sp. GSS17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3019299..3030369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW97_RS13645 csrA 3019340..3019537 (-) 198 WP_036800069.1 carbon storage regulator CsrA -
  PGW97_RS13650 - 3019623..3020801 (-) 1179 WP_273857501.1 aspartate kinase -
  PGW97_RS13655 alaS 3020818..3023442 (-) 2625 WP_217391954.1 alanine--tRNA ligase -
  PGW97_RS13660 recX 3023719..3024183 (-) 465 WP_047886872.1 recombination regulator RecX -
  PGW97_RS13665 recA 3024299..3025369 (-) 1071 WP_047886871.1 recombinase RecA Machinery gene
  PGW97_RS13670 pncC 3025493..3025975 (-) 483 WP_273857502.1 nicotinamide-nucleotide amidase -
  PGW97_RS13675 mutS 3026230..3028767 (+) 2538 WP_273859671.1 DNA mismatch repair protein MutS -
  PGW97_RS13680 rpoS 3028945..3029937 (-) 993 WP_047886868.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38204.54 Da        Isoelectric Point: 4.7411

>NTDB_id=786181 PGW97_RS13665 WP_047886871.1 3024299..3025369(-) (recA) [Photobacterium sp. GSS17]
MDDNKQKALAAALGQIEKQFGKGSIMKLGDNRAMDVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIA
AAQRDGKTCAFIDAEHALDPVYAKKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKMIEKAGAWYSYKGDKIGQGKANACKYLAENTEIAAEIEK
QLRDMLLNTENVQGGESAPASEDDVLENMDAEDQAF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=786181 PGW97_RS13665 WP_047886871.1 3024299..3025369(-) (recA) [Photobacterium sp. GSS17]
ATGGACGACAACAAGCAGAAGGCACTTGCCGCCGCGTTAGGTCAAATTGAGAAGCAATTCGGTAAAGGCTCGATCATGAA
ATTGGGCGACAACCGCGCAATGGATGTAGAAACAGTGTCTACTGGTTCTCTGTCTCTCGATATCGCCTTGGGTGCTGGCG
GCCTGCCGATGGGTCGTATTGTTGAAATTTACGGTCCGGAATCATCAGGTAAAACCACACTGACTCTGGAAGTGATTGCC
GCGGCGCAACGTGACGGTAAAACCTGTGCGTTCATTGATGCTGAGCACGCCCTGGATCCGGTATATGCGAAAAAACTGGG
TGTTGATATTGACCAGCTGCTGGTATCCCAGCCGGACACCGGTGAGCAGGCCCTGGAAATCGCTGATGCACTGGCGCGTT
CAGGCGCGGTAGATATCCTGGTGGTTGACTCCGTTGCAGCCCTGACGCCGAAAGCGGAAATCGAAGGTGAAATGGGTGAC
TCGCACATGGGTCTGCAGGCACGTATGCTGTCTCAGGCGATGCGTAAGCTGACCGGTAACCTGAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTAACGCCC
TGAAATTCTATGCCTCTGTTCGTCTGGACATCCGCCGTACCGGTGCGATTAAAGAAGGCGATGAAGTGGTGGGTAACGAA
ACCCGTATCAAAGTGGTGAAGAACAAGATCGCGGCACCGTTCAAGCAGGCTGATACCCAAATCCTGTACGGACAAGGTTT
TAACCGTAATGGTGAACTGGTGGATTTGGGCGTTAAGCACAAGATGATCGAAAAAGCCGGTGCCTGGTACAGTTACAAGG
GTGACAAGATCGGTCAGGGTAAGGCGAATGCCTGCAAATATCTGGCTGAGAACACTGAAATTGCGGCGGAAATCGAGAAG
CAACTGCGTGATATGCTGCTGAACACTGAAAACGTGCAAGGCGGCGAATCTGCTCCAGCGTCTGAAGACGACGTACTGGA
AAACATGGATGCAGAAGATCAGGCGTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1H488

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.696

96.91

0.86
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.696

96.91

0.86
  recA Pseudomonas stutzeri DSM 10701

73.761

96.348

0.711
  recA Acinetobacter baylyi ADP1

71.92

98.034

0.705
  recA Acinetobacter baumannii D1279779

75.076

92.416

0.694
  recA Glaesserella parasuis strain SC1401

68.421

96.067

0.657
  recA Ralstonia pseudosolanacearum GMI1000

71.704

87.36

0.626
  recA Neisseria gonorrhoeae MS11

68.519

91.011

0.624
  recA Neisseria gonorrhoeae MS11

68.519

91.011

0.624
  recA Neisseria gonorrhoeae strain FA1090

68.519

91.011

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.87

96.91

0.59
  recA Streptococcus mitis SK321

60.29

96.91

0.584
  recA Streptococcus mutans UA159

59.195

97.753

0.579
  recA Streptococcus pneumoniae R6

63.467

90.73

0.576
  recA Streptococcus pneumoniae TIGR4

63.467

90.73

0.576
  recA Streptococcus pneumoniae Rx1

63.467

90.73

0.576
  recA Streptococcus pneumoniae D39

63.467

90.73

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.169

0.57
  recA Streptococcus mitis NCTC 12261

62.848

90.73

0.57
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

92.978

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

62.305

90.169

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.728

91.011

0.562
  recA Streptococcus pyogenes NZ131

60.923

91.292

0.556
  recA Helicobacter pylori strain NCTC11637

57.143

96.348

0.551
  recA Helicobacter pylori 26695

56.851

96.348

0.548
  recA Lactococcus lactis subsp. cremoris KW2

59.752

90.73

0.542