Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PSH68_RS06290 | Genome accession | NZ_CP117464 |
| Coordinates | 1397701..1398759 (+) | Length | 352 a.a. |
| NCBI ID | WP_003189042.1 | Uniprot ID | A0A7Y7ZLK5 |
| Organism | Pseudomonas lurida strain FP1465 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1383662..1398759 | 1397701..1398759 | within | 0 |
Gene organization within MGE regions
Location: 1383662..1398759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH68_RS06185 (PSH68_06185) | - | 1383662..1384396 (+) | 735 | WP_080758221.1 | XRE family transcriptional regulator | - |
| PSH68_RS06190 (PSH68_06190) | - | 1384990..1385334 (+) | 345 | WP_034102420.1 | phage holin family protein | - |
| PSH68_RS06195 (PSH68_06195) | - | 1385356..1385871 (+) | 516 | WP_069022008.1 | hypothetical protein | - |
| PSH68_RS06200 (PSH68_06200) | - | 1385875..1386486 (+) | 612 | WP_305434764.1 | phage baseplate assembly protein V | - |
| PSH68_RS06205 (PSH68_06205) | - | 1386496..1386828 (+) | 333 | WP_034102423.1 | phage baseplate protein | - |
| PSH68_RS06210 (PSH68_06210) | - | 1386825..1387820 (+) | 996 | WP_069022014.1 | baseplate J/gp47 family protein | - |
| PSH68_RS06215 (PSH68_06215) | - | 1387817..1388446 (+) | 630 | WP_069022017.1 | phage tail protein I | - |
| PSH68_RS06220 (PSH68_06220) | - | 1388447..1388920 (+) | 474 | Protein_1221 | phage tail protein | - |
| PSH68_RS06225 (PSH68_06225) | - | 1389393..1389821 (+) | 429 | WP_240054395.1 | phage tail assembly chaperone | - |
| PSH68_RS06230 (PSH68_06230) | - | 1389914..1390087 (+) | 174 | WP_164441209.1 | hypothetical protein | - |
| PSH68_RS06235 (PSH68_06235) | - | 1390090..1391256 (+) | 1167 | WP_305434765.1 | phage tail protein | - |
| PSH68_RS06240 (PSH68_06240) | - | 1391256..1391762 (+) | 507 | WP_069022024.1 | phage major tail tube protein | - |
| PSH68_RS06245 (PSH68_06245) | - | 1391944..1392516 (+) | 573 | WP_305434767.1 | phage tail assembly protein | - |
| PSH68_RS06250 (PSH68_06250) | - | 1392513..1392638 (+) | 126 | WP_034102430.1 | hypothetical protein | - |
| PSH68_RS06255 (PSH68_06255) | - | 1392644..1394377 (+) | 1734 | WP_305434768.1 | phage tail tape measure protein | - |
| PSH68_RS06260 (PSH68_06260) | - | 1394377..1394760 (+) | 384 | WP_098465878.1 | phage tail protein | - |
| PSH68_RS06265 (PSH68_06265) | - | 1394753..1394965 (+) | 213 | WP_098465879.1 | tail protein X | - |
| PSH68_RS06270 (PSH68_06270) | - | 1394975..1395985 (+) | 1011 | WP_186761613.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| PSH68_RS06275 (PSH68_06275) | - | 1396006..1396563 (+) | 558 | WP_154988651.1 | glycoside hydrolase family 19 protein | - |
| PSH68_RS06280 (PSH68_06280) | - | 1396551..1397030 (+) | 480 | WP_122749677.1 | lysis system i-spanin subunit Rz | - |
| PSH68_RS06285 (PSH68_06285) | - | 1397116..1397616 (+) | 501 | WP_034102437.1 | CinA family protein | - |
| PSH68_RS06290 (PSH68_06290) | recA | 1397701..1398759 (+) | 1059 | WP_003189042.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37580.12 Da Isoelectric Point: 5.3036
>NTDB_id=785800 PSH68_RS06290 WP_003189042.1 1397701..1398759(+) (recA) [Pseudomonas lurida strain FP1465]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=785800 PSH68_RS06290 WP_003189042.1 1397701..1398759(+) (recA) [Pseudomonas lurida strain FP1465]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACTACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCACTGGACCCTGAATACGCCGGTAAGCTGGG
CGTTAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTCCAAGCCCGCCTGATGTCCCAGGCGTTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAATGGCGAGATGATCGACCTGGGCGTTCTGCATGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAAGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGACATCGCTGCCACGCTTGAGAAG
CAGATCCGTGACAAGCTGCTCACCGCAGCGCCAGACGTGAAAGCTGCCGCCAACCGTGAGCCGGTTGAAGAAGTGGAAGA
AGCTGACACTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACTACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCACTGGACCCTGAATACGCCGGTAAGCTGGG
CGTTAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTCCAAGCCCGCCTGATGTCCCAGGCGTTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAATGGCGAGATGATCGACCTGGGCGTTCTGCATGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAAGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGACATCGCTGCCACGCTTGAGAAG
CAGATCCGTGACAAGCTGCTCACCGCAGCGCCAGACGTGAAAGCTGCCGCCAACCGTGAGCCGGTTGAAGAAGTGGAAGA
AGCTGACACTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.