Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PSH69_RS23865 | Genome accession | NZ_CP117461 |
| Coordinates | 5335132..5336184 (-) | Length | 350 a.a. |
| NCBI ID | WP_007940559.1 | Uniprot ID | A0A291AD36 |
| Organism | Pseudomonas sp. FP1740 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 5334656..5359172 | 5335132..5336184 | within | 0 |
Gene organization within MGE regions
Location: 5334656..5359172
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH69_RS23860 (PSH69_23850) | recX | 5334656..5335123 (-) | 468 | WP_026286484.1 | recombination regulator RecX | - |
| PSH69_RS23865 (PSH69_23855) | recA | 5335132..5336184 (-) | 1053 | WP_007940559.1 | recombinase RecA | Machinery gene |
| PSH69_RS23870 (PSH69_23860) | - | 5336268..5336768 (-) | 501 | WP_019647843.1 | CinA family protein | - |
| PSH69_RS23875 (PSH69_23865) | - | 5336849..5337367 (-) | 519 | WP_305410014.1 | lysis system i-spanin subunit Rz | - |
| PSH69_RS23880 (PSH69_23870) | - | 5337349..5337912 (-) | 564 | WP_305410015.1 | glycoside hydrolase family 19 protein | - |
| PSH69_RS23885 (PSH69_23875) | - | 5337962..5339110 (-) | 1149 | WP_305410016.1 | phage tail protein | - |
| PSH69_RS23890 (PSH69_23880) | - | 5339122..5339721 (-) | 600 | WP_305410017.1 | YmfQ family protein | - |
| PSH69_RS23895 (PSH69_23885) | - | 5339709..5340752 (-) | 1044 | WP_305410018.1 | baseplate J/gp47 family protein | - |
| PSH69_RS23900 (PSH69_23890) | - | 5340742..5341140 (-) | 399 | WP_305410019.1 | phage GP46 family protein | - |
| PSH69_RS23905 (PSH69_23895) | - | 5341140..5341649 (-) | 510 | WP_305410020.1 | phage baseplate assembly protein V | - |
| PSH69_RS23910 (PSH69_23900) | - | 5341717..5342760 (-) | 1044 | WP_019580999.1 | phage baseplate assembly protein | - |
| PSH69_RS23915 (PSH69_23905) | - | 5342764..5343999 (-) | 1236 | WP_305410021.1 | DNA circularization protein | - |
| PSH69_RS23920 (PSH69_23910) | - | 5343986..5345486 (-) | 1501 | Protein_4727 | phage tail protein | - |
| PSH69_RS23925 (PSH69_23915) | - | 5345617..5345913 (-) | 297 | WP_018926972.1 | phage tail assembly protein | - |
| PSH69_RS23930 (PSH69_23920) | - | 5345910..5346257 (-) | 348 | WP_018926973.1 | phage tail tube protein | - |
| PSH69_RS23935 (PSH69_23925) | - | 5346325..5347821 (-) | 1497 | WP_305410023.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PSH69_RS23940 (PSH69_23930) | - | 5347821..5348003 (-) | 183 | WP_305410024.1 | DUF2635 domain-containing protein | - |
| PSH69_RS23945 (PSH69_23935) | - | 5348000..5348584 (-) | 585 | WP_305410025.1 | hypothetical protein | - |
| PSH69_RS23950 (PSH69_23940) | - | 5348713..5349060 (-) | 348 | WP_019581003.1 | phage holin family protein | - |
| PSH69_RS23955 (PSH69_23945) | - | 5349581..5350315 (-) | 735 | WP_026331839.1 | XRE family transcriptional regulator | - |
| PSH69_RS23960 (PSH69_23950) | mutS | 5350515..5353094 (+) | 2580 | WP_026286487.1 | DNA mismatch repair protein MutS | - |
| PSH69_RS23965 (PSH69_23955) | fdxA | 5353237..5353560 (+) | 324 | WP_007940535.1 | ferredoxin FdxA | - |
| PSH69_RS23970 (PSH69_23960) | rpoS | 5354046..5355053 (-) | 1008 | WP_007940534.1 | RNA polymerase sigma factor RpoS | - |
| PSH69_RS23975 (PSH69_23965) | - | 5355161..5356018 (-) | 858 | WP_305410026.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PSH69_RS23980 (PSH69_23970) | - | 5356230..5356865 (-) | 636 | WP_173861137.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| PSH69_RS23985 (PSH69_23975) | surE | 5356907..5357656 (-) | 750 | WP_018926998.1 | 5'/3'-nucleotidase SurE | - |
| PSH69_RS23990 (PSH69_23980) | truD | 5357644..5358702 (-) | 1059 | WP_305410027.1 | tRNA pseudouridine(13) synthase TruD | - |
| PSH69_RS23995 (PSH69_23985) | ispF | 5358699..5359172 (-) | 474 | WP_019581009.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37287.76 Da Isoelectric Point: 5.2997
>NTDB_id=785727 PSH69_RS23865 WP_007940559.1 5335132..5336184(-) (recA) [Pseudomonas sp. FP1740]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEIAATLEK
QLRDKLLTPAPDVKASAVRETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEIAATLEK
QLRDKLLTPAPDVKASAVRETEDDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=785727 PSH69_RS23865 WP_007940559.1 5335132..5336184(-) (recA) [Pseudomonas sp. FP1740]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACCCTGACATTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCTCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAATGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTACCAAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGTGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCCGCGACTCTCGAGAAG
CAGCTGCGCGACAAGCTGCTGACCCCAGCACCGGACGTCAAGGCTTCGGCTGTCAGAGAGACCGAAGACGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACCCTGACATTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCTCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAATGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTACCAAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGTGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCCGCGACTCTCGAGAAG
CAGCTGCGCGACAAGCTGCTGACCCCAGCACCGGACGTCAAGGCTTCGGCTGTCAGAGAGACCGAAGACGACCTGGCTGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.