Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PSH60_RS05755 | Genome accession | NZ_CP117456 |
| Coordinates | 1287872..1288930 (+) | Length | 352 a.a. |
| NCBI ID | WP_003189042.1 | Uniprot ID | A0A7Y7ZLK5 |
| Organism | Pseudomonas simiae strain FP1885 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1273212..1288930 | 1287872..1288930 | within | 0 |
Gene organization within MGE regions
Location: 1273212..1288930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH60_RS05635 (PSH60_05635) | - | 1273212..1273700 (-) | 489 | WP_010212724.1 | Panacea domain-containing protein | - |
| PSH60_RS05640 (PSH60_05640) | - | 1273968..1274702 (+) | 735 | WP_010212723.1 | XRE family transcriptional regulator | - |
| PSH60_RS05645 (PSH60_05645) | - | 1274852..1275049 (+) | 198 | WP_021492473.1 | hypothetical protein | - |
| PSH60_RS05650 (PSH60_05650) | - | 1275300..1275644 (+) | 345 | WP_021492472.1 | phage holin family protein | - |
| PSH60_RS05655 (PSH60_05655) | - | 1275666..1276181 (+) | 516 | WP_010212719.1 | hypothetical protein | - |
| PSH60_RS05660 (PSH60_05660) | - | 1276185..1276796 (+) | 612 | WP_047541315.1 | phage baseplate assembly protein V | - |
| PSH60_RS05665 (PSH60_05665) | - | 1276806..1277138 (+) | 333 | WP_021492470.1 | phage baseplate protein | - |
| PSH60_RS05670 (PSH60_05670) | - | 1277135..1278130 (+) | 996 | WP_042571728.1 | baseplate J/gp47 family protein | - |
| PSH60_RS05675 (PSH60_05675) | - | 1278127..1278765 (+) | 639 | WP_021492468.1 | phage tail protein I | - |
| PSH60_RS05680 (PSH60_05680) | - | 1278762..1279292 (+) | 531 | WP_106118926.1 | hypothetical protein | - |
| PSH60_RS05685 (PSH60_05685) | - | 1279341..1280123 (+) | 783 | WP_010212713.1 | hypothetical protein | - |
| PSH60_RS05690 (PSH60_05690) | - | 1280125..1280427 (+) | 303 | WP_010212711.1 | hypothetical protein | - |
| PSH60_RS05695 (PSH60_05695) | - | 1280516..1280689 (+) | 174 | WP_021492464.1 | hypothetical protein | - |
| PSH60_RS05700 (PSH60_05700) | - | 1280692..1281858 (+) | 1167 | WP_042571729.1 | tail protein | - |
| PSH60_RS05705 (PSH60_05705) | - | 1281858..1282364 (+) | 507 | WP_010212707.1 | phage major tail tube protein | - |
| PSH60_RS05710 (PSH60_05710) | - | 1282418..1282990 (+) | 573 | WP_010212706.1 | phage tail assembly protein | - |
| PSH60_RS05715 (PSH60_05715) | - | 1282987..1283112 (+) | 126 | WP_010212704.1 | hypothetical protein | - |
| PSH60_RS05720 (PSH60_05720) | - | 1283118..1284578 (+) | 1461 | WP_187516947.1 | tail tape measure protein | - |
| PSH60_RS05725 (PSH60_05725) | - | 1284578..1284961 (+) | 384 | WP_010212701.1 | phage tail protein | - |
| PSH60_RS05730 (PSH60_05730) | - | 1284954..1285166 (+) | 213 | WP_010212700.1 | tail protein X | - |
| PSH60_RS05735 (PSH60_05735) | - | 1285176..1286183 (+) | 1008 | WP_010212698.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| PSH60_RS05740 (PSH60_05740) | - | 1286190..1286747 (+) | 558 | WP_010212696.1 | glycoside hydrolase family 19 protein | - |
| PSH60_RS05745 (PSH60_05745) | - | 1286735..1287205 (+) | 471 | WP_029529227.1 | lysis system i-spanin subunit Rz | - |
| PSH60_RS05750 (PSH60_05750) | - | 1287287..1287787 (+) | 501 | WP_010212691.1 | CinA family protein | - |
| PSH60_RS05755 (PSH60_05755) | recA | 1287872..1288930 (+) | 1059 | WP_003189042.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37580.12 Da Isoelectric Point: 5.3036
>NTDB_id=785583 PSH60_RS05755 WP_003189042.1 1287872..1288930(+) (recA) [Pseudomonas simiae strain FP1885]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=785583 PSH60_RS05755 WP_003189042.1 1287872..1288930(+) (recA) [Pseudomonas simiae strain FP1885]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTCATTGCC
CAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGCAAACTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGTGAT
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAAATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTGGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTCGTCGAGAAATCGGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGACATTGCTGCCACACTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCGCCGCTCCAGACGTGAAAGCTGCCGCCAACCGCGAGCCGGTTGAAGAAGTGGAAGA
AGCTGATACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTCATTGCC
CAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGCAAACTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGTGAT
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAAATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTGGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTCGTCGAGAAATCGGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGACATTGCTGCCACACTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCGCCGCTCCAGACGTGAAAGCTGCCGCCAACCGCGAGCCGGTTGAAGAAGTGGAAGA
AGCTGATACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.