Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PSH89_RS05860 Genome accession   NZ_CP117455
Coordinates   1337948..1339006 (+) Length   352 a.a.
NCBI ID   WP_014717176.1    Uniprot ID   A0A0W0N297
Organism   Pseudomonas sp. FP1911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1322903..1339006 1337948..1339006 within 0


Gene organization within MGE regions


Location: 1322903..1339006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH89_RS05750 (PSH89_05750) - 1322903..1323391 (-) 489 WP_014717156.1 Panacea domain-containing protein -
  PSH89_RS05755 (PSH89_05755) - 1323617..1324360 (+) 744 WP_172832690.1 XRE family transcriptional regulator -
  PSH89_RS05760 (PSH89_05760) - 1324951..1325289 (+) 339 WP_005785384.1 phage holin family protein -
  PSH89_RS05765 (PSH89_05765) - 1325313..1325828 (+) 516 WP_014717158.1 hypothetical protein -
  PSH89_RS05770 (PSH89_05770) - 1325832..1326443 (+) 612 WP_038449087.1 phage baseplate assembly protein V -
  PSH89_RS05775 (PSH89_05775) - 1326453..1326785 (+) 333 WP_014717160.1 phage baseplate protein -
  PSH89_RS05780 (PSH89_05780) - 1326782..1327777 (+) 996 WP_014717161.1 baseplate J/gp47 family protein -
  PSH89_RS05785 (PSH89_05785) - 1327774..1328412 (+) 639 WP_014717162.1 phage tail protein I -
  PSH89_RS05790 (PSH89_05790) - 1328409..1328939 (+) 531 WP_014717163.1 tail fiber protein -
  PSH89_RS05795 (PSH89_05795) - 1328993..1329745 (+) 753 WP_020301162.1 hypothetical protein -
  PSH89_RS05800 (PSH89_05800) - 1329755..1329991 (+) 237 WP_014717165.1 phage tail assembly chaperone -
  PSH89_RS05805 (PSH89_05805) - 1330080..1330253 (+) 174 WP_003189022.1 hypothetical protein -
  PSH89_RS05810 (PSH89_05810) - 1330256..1331422 (+) 1167 WP_014717166.1 tail protein -
  PSH89_RS05815 (PSH89_05815) - 1331422..1331928 (+) 507 WP_014717167.1 phage major tail tube protein -
  PSH89_RS05820 (PSH89_05820) - 1332109..1332681 (+) 573 WP_014717168.1 phage tail assembly protein -
  PSH89_RS05825 (PSH89_05825) - 1332678..1332803 (+) 126 WP_014717169.1 hypothetical protein -
  PSH89_RS05830 (PSH89_05830) - 1332810..1335032 (+) 2223 WP_038449089.1 phage tail tape measure protein -
  PSH89_RS05835 (PSH89_05835) - 1335032..1335415 (+) 384 WP_014717171.1 phage tail protein -
  PSH89_RS05840 (PSH89_05840) - 1335408..1335620 (+) 213 WP_014717172.1 tail protein X -
  PSH89_RS05845 (PSH89_05845) - 1335630..1336631 (+) 1002 WP_032872893.1 contractile injection system protein, VgrG/Pvc8 family -
  PSH89_RS05850 (PSH89_05850) - 1336654..1337211 (+) 558 WP_014717174.1 glycoside hydrolase family 19 protein -
  PSH89_RS05855 (PSH89_05855) - 1337364..1337864 (+) 501 WP_014717175.1 CinA family protein -
  PSH89_RS05860 (PSH89_05860) recA 1337948..1339006 (+) 1059 WP_014717176.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37584.13 Da        Isoelectric Point: 5.2997

>NTDB_id=785559 PSH89_RS05860 WP_014717176.1 1337948..1339006(+) (recA) [Pseudomonas sp. FP1911]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVDEMEEADTDV

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=785559 PSH89_RS05860 WP_014717176.1 1337948..1339006(+) (recA) [Pseudomonas sp. FP1911]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGCCTGGACATCGCGCTCGGCATTGGTG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAAAAGATGGGCGCTACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATTACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAAGTGGCCCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTACTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGATATCGCTGCCACGCTTGAGAAG
CAGATCCGCGACAAGCTTCTGACCGCAGCGCCGGACGTGAAAGCGGCTGCCAACCGCGAGCCGGTAGATGAAATGGAAGA
AGCCGACACTGACGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N297

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.216

100

0.872
  recA Acinetobacter baylyi ADP1

74.64

98.58

0.736
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

93.182

0.699
  recA Vibrio cholerae strain A1552

75

93.182

0.699
  recA Glaesserella parasuis strain SC1401

69.883

97.159

0.679
  recA Ralstonia pseudosolanacearum GMI1000

70.149

95.17

0.668
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.659

100

0.597
  recA Helicobacter pylori 26695

59.091

100

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus pyogenes NZ131

58.232

93.182

0.543
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus mitis NCTC 12261

58.824

91.761

0.54
  recA Streptococcus mitis SK321

58.824

91.761

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.193

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

92.614

0.526