Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PSH78_RS06200 | Genome accession | NZ_CP117452 |
| Coordinates | 1325415..1326467 (+) | Length | 350 a.a. |
| NCBI ID | WP_079303629.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. FP198 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1299377..1331097 | 1325415..1326467 | within | 0 |
Gene organization within MGE regions
Location: 1299377..1331097
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH78_RS06040 (PSH78_06040) | - | 1299377..1300222 (+) | 846 | WP_305499117.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PSH78_RS06045 (PSH78_06045) | rpoS | 1300329..1301336 (+) | 1008 | WP_003198289.1 | RNA polymerase sigma factor RpoS | - |
| PSH78_RS06050 (PSH78_06050) | fdxA | 1301827..1302150 (-) | 324 | WP_305499118.1 | ferredoxin FdxA | - |
| PSH78_RS06055 (PSH78_06055) | mutS | 1302295..1304862 (-) | 2568 | WP_305499120.1 | DNA mismatch repair protein MutS | - |
| PSH78_RS06060 (PSH78_06060) | - | 1305091..1305258 (-) | 168 | WP_305499122.1 | hypothetical protein | - |
| PSH78_RS06065 (PSH78_06065) | - | 1305332..1305562 (-) | 231 | Protein_1194 | zeta toxin family protein | - |
| PSH78_RS06070 (PSH78_06070) | - | 1305819..1306094 (-) | 276 | WP_305499124.1 | DUF6124 family protein | - |
| PSH78_RS06075 (PSH78_06075) | - | 1306640..1307374 (+) | 735 | WP_305501185.1 | XRE family transcriptional regulator | - |
| PSH78_RS06080 (PSH78_06080) | - | 1307834..1308023 (+) | 190 | Protein_1197 | Com family DNA-binding transcriptional regulator | - |
| PSH78_RS06085 (PSH78_06085) | - | 1308020..1308601 (+) | 582 | WP_305499125.1 | DUF642 domain-containing protein | - |
| PSH78_RS06090 (PSH78_06090) | - | 1308665..1309015 (+) | 351 | WP_305499127.1 | phage holin family protein | - |
| PSH78_RS06095 (PSH78_06095) | - | 1309147..1309731 (+) | 585 | WP_305499129.1 | hypothetical protein | - |
| PSH78_RS06100 (PSH78_06100) | - | 1309728..1309910 (+) | 183 | WP_305499131.1 | DUF2635 domain-containing protein | - |
| PSH78_RS06105 (PSH78_06105) | - | 1309910..1311406 (+) | 1497 | WP_305499132.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PSH78_RS06110 (PSH78_06110) | - | 1311474..1311821 (+) | 348 | WP_024780162.1 | phage tail tube protein | - |
| PSH78_RS06115 (PSH78_06115) | - | 1311818..1312114 (+) | 297 | WP_305499134.1 | phage tail assembly protein | - |
| PSH78_RS06120 (PSH78_06120) | - | 1312245..1313819 (+) | 1575 | WP_305499136.1 | phage tail protein | - |
| PSH78_RS06125 (PSH78_06125) | - | 1313806..1315044 (+) | 1239 | WP_305499137.1 | DNA circularization protein | - |
| PSH78_RS06130 (PSH78_06130) | - | 1315048..1316088 (+) | 1041 | WP_305499138.1 | phage baseplate assembly protein | - |
| PSH78_RS06135 (PSH78_06135) | - | 1316298..1316807 (+) | 510 | WP_305499140.1 | phage baseplate assembly protein V | - |
| PSH78_RS06140 (PSH78_06140) | - | 1316807..1317205 (+) | 399 | WP_305499141.1 | phage GP46 family protein | - |
| PSH78_RS06145 (PSH78_06145) | - | 1317195..1318235 (+) | 1041 | WP_305499142.1 | baseplate J/gp47 family protein | - |
| PSH78_RS06150 (PSH78_06150) | - | 1318223..1318822 (+) | 600 | WP_305499143.1 | YmfQ family protein | - |
| PSH78_RS06155 (PSH78_06155) | - | 1318834..1320003 (+) | 1170 | WP_305499144.1 | phage tail protein | - |
| PSH78_RS06160 (PSH78_06160) | - | 1320000..1320509 (+) | 510 | WP_305499146.1 | phage tail protein | - |
| PSH78_RS06165 (PSH78_06165) | - | 1320539..1321633 (+) | 1095 | WP_305499147.1 | phage tail protein | - |
| PSH78_RS06170 (PSH78_06170) | - | 1321641..1322201 (+) | 561 | WP_305499148.1 | tail fiber assembly protein | - |
| PSH78_RS06175 (PSH78_06175) | - | 1322310..1323206 (+) | 897 | WP_305499150.1 | phage tail protein | - |
| PSH78_RS06180 (PSH78_06180) | - | 1323207..1323653 (+) | 447 | WP_305499152.1 | phage tail assembly chaperone | - |
| PSH78_RS06185 (PSH78_06185) | - | 1323678..1324241 (+) | 564 | WP_305499153.1 | glycoside hydrolase family 19 protein | - |
| PSH78_RS06190 (PSH78_06190) | - | 1324223..1324759 (+) | 537 | WP_305499155.1 | lysis system i-spanin subunit Rz | - |
| PSH78_RS06195 (PSH78_06195) | - | 1324831..1325331 (+) | 501 | WP_305499157.1 | CinA family protein | - |
| PSH78_RS06200 (PSH78_06200) | recA | 1325415..1326467 (+) | 1053 | WP_079303629.1 | recombinase RecA | Machinery gene |
| PSH78_RS06205 (PSH78_06205) | recX | 1326476..1326943 (+) | 468 | WP_305499159.1 | recombination regulator RecX | - |
| PSH78_RS06210 (PSH78_06210) | - | 1326988..1328106 (-) | 1119 | WP_305499160.1 | TIGR00730 family Rossman fold protein | - |
| PSH78_RS06215 (PSH78_06215) | - | 1328087..1328284 (-) | 198 | WP_305499162.1 | hypothetical protein | - |
| PSH78_RS06220 (PSH78_06220) | - | 1328683..1328877 (+) | 195 | WP_305499163.1 | hypothetical protein | - |
| PSH78_RS06225 (PSH78_06225) | - | 1328878..1329300 (-) | 423 | WP_305499165.1 | quorum-sensing-regulated virulence factor family protein | - |
| PSH78_RS06230 (PSH78_06230) | - | 1329484..1330230 (+) | 747 | WP_305499167.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| PSH78_RS06235 (PSH78_06235) | erdR | 1330444..1331097 (+) | 654 | WP_305499169.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37216.69 Da Isoelectric Point: 5.5226
>NTDB_id=785481 PSH78_RS06200 WP_079303629.1 1325415..1326467(+) (recA) [Pseudomonas sp. FP198]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKAVANRETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKAVANRETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=785481 PSH78_RS06200 WP_079303629.1 1325415..1326467(+) (recA) [Pseudomonas sp. FP198]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGCCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCGCTTGGCATCGGCG
GCTTGCCAAAAGGTCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACCCTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACTGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTAGCGGCACTGGTACCCAAGGCGGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTGATTTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGTCCTGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTGGACATCCGTCGTACCGGCGCGGTGAAAGAGGGTGATGAGGTTGTCGGCAGTGAA
ACCCGCGTCAAGGTCGTGAAAAACAAGGTTGCATCGCCGTTCCGTCAGGCTGAATTCCAGATCCTGTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGGTTTGTCGAAAAATCCGGCGCCTGGTATGCCTACAACG
GTACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTCGCGGCAGCTCTCGAGAAG
CAACTGCGTGACAAACTGTTGAGCCCGGTTGCAGACGTCAAGGCCGTGGCCAACCGCGAGACTGCAGACGATCTGGCAGA
CGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGCCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCGCTTGGCATCGGCG
GCTTGCCAAAAGGTCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACCCTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACTGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTAGCGGCACTGGTACCCAAGGCGGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTGATTTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGTCCTGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTGGACATCCGTCGTACCGGCGCGGTGAAAGAGGGTGATGAGGTTGTCGGCAGTGAA
ACCCGCGTCAAGGTCGTGAAAAACAAGGTTGCATCGCCGTTCCGTCAGGCTGAATTCCAGATCCTGTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGGTTTGTCGAAAAATCCGGCGCCTGGTATGCCTACAACG
GTACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTCGCGGCAGCTCTCGAGAAG
CAACTGCGTGACAAACTGTTGAGCCCGGTTGCAGACGTCAAGGCCGTGGCCAACCGCGAGACTGCAGACGATCTGGCAGA
CGCTGACATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.