Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PSH79_RS06050 | Genome accession | NZ_CP117445 |
| Coordinates | 1356965..1358023 (+) | Length | 352 a.a. |
| NCBI ID | WP_095188892.1 | Uniprot ID | A0A286RU77 |
| Organism | Pseudomonas sp. FP2196 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1318127..1362458 | 1356965..1358023 | within | 0 |
Gene organization within MGE regions
Location: 1318127..1362458
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH79_RS05820 (PSH79_05820) | - | 1318127..1319008 (+) | 882 | WP_187679137.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PSH79_RS05825 (PSH79_05825) | rpoS | 1319115..1320122 (+) | 1008 | WP_305441659.1 | RNA polymerase sigma factor RpoS | - |
| PSH79_RS05830 (PSH79_05830) | fdxA | 1320666..1320989 (-) | 324 | WP_007908827.1 | ferredoxin FdxA | - |
| PSH79_RS05835 (PSH79_05835) | mutS | 1321154..1323736 (-) | 2583 | WP_305441661.1 | DNA mismatch repair protein MutS | - |
| PSH79_RS05840 (PSH79_05840) | - | 1323946..1324680 (+) | 735 | WP_095191963.1 | XRE family transcriptional regulator | - |
| PSH79_RS05845 (PSH79_05845) | - | 1324830..1325018 (+) | 189 | WP_305441662.1 | hypothetical protein | - |
| PSH79_RS05850 (PSH79_05850) | - | 1325274..1325687 (+) | 414 | WP_305441663.1 | tail fiber assembly protein | - |
| PSH79_RS05855 (PSH79_05855) | - | 1325833..1326171 (+) | 339 | WP_038357950.1 | phage holin family protein | - |
| PSH79_RS05860 (PSH79_05860) | - | 1326242..1326763 (+) | 522 | WP_305441664.1 | hypothetical protein | - |
| PSH79_RS05865 (PSH79_05865) | - | 1326767..1327375 (+) | 609 | WP_305441665.1 | phage baseplate assembly protein V | - |
| PSH79_RS05870 (PSH79_05870) | - | 1327390..1327722 (+) | 333 | WP_305441666.1 | phage baseplate protein | - |
| PSH79_RS05875 (PSH79_05875) | - | 1327719..1328714 (+) | 996 | WP_305441667.1 | baseplate J/gp47 family protein | - |
| PSH79_RS05880 (PSH79_05880) | - | 1328711..1329346 (+) | 636 | WP_305441669.1 | phage tail protein I | - |
| PSH79_RS05885 (PSH79_05885) | - | 1329347..1331737 (+) | 2391 | WP_305441670.1 | phage tail protein | - |
| PSH79_RS05890 (PSH79_05890) | - | 1331762..1332310 (+) | 549 | WP_305441671.1 | DUF4376 domain-containing protein | - |
| PSH79_RS05895 (PSH79_05895) | - | 1332412..1332597 (+) | 186 | WP_003222199.1 | hypothetical protein | - |
| PSH79_RS05900 (PSH79_05900) | - | 1332600..1333766 (+) | 1167 | WP_215501440.1 | phage tail protein | - |
| PSH79_RS05905 (PSH79_05905) | - | 1333766..1334272 (+) | 507 | WP_305441673.1 | phage major tail tube protein | - |
| PSH79_RS05910 (PSH79_05910) | - | 1334442..1335023 (+) | 582 | WP_305441674.1 | phage tail assembly protein | - |
| PSH79_RS05915 (PSH79_05915) | - | 1335294..1337357 (+) | 2064 | WP_305441676.1 | phage tail tape measure protein | - |
| PSH79_RS05920 (PSH79_05920) | - | 1337354..1337737 (+) | 384 | WP_262195205.1 | phage tail protein | - |
| PSH79_RS05925 (PSH79_05925) | - | 1337730..1337942 (+) | 213 | WP_100847353.1 | tail protein X | - |
| PSH79_RS05930 (PSH79_05930) | - | 1337952..1338968 (+) | 1017 | WP_305441677.1 | phage late control D family protein | - |
| PSH79_RS05935 (PSH79_05935) | - | 1339116..1339700 (+) | 585 | WP_305441678.1 | hypothetical protein | - |
| PSH79_RS05940 (PSH79_05940) | - | 1339697..1339879 (+) | 183 | WP_095188872.1 | DUF2635 domain-containing protein | - |
| PSH79_RS05945 (PSH79_05945) | - | 1339879..1341375 (+) | 1497 | WP_305441679.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PSH79_RS05950 (PSH79_05950) | - | 1341443..1341790 (+) | 348 | WP_007908779.1 | phage tail tube protein | - |
| PSH79_RS05955 (PSH79_05955) | - | 1341787..1342083 (+) | 297 | WP_003222226.1 | phage tail assembly protein | - |
| PSH79_RS05960 (PSH79_05960) | - | 1342214..1343989 (+) | 1776 | WP_305441680.1 | phage tail protein | - |
| PSH79_RS05965 (PSH79_05965) | - | 1343976..1345214 (+) | 1239 | WP_305441681.1 | DNA circularization protein | - |
| PSH79_RS05970 (PSH79_05970) | - | 1345218..1346264 (+) | 1047 | WP_305441683.1 | phage baseplate assembly protein | - |
| PSH79_RS05975 (PSH79_05975) | - | 1346379..1346888 (+) | 510 | WP_305441685.1 | phage baseplate assembly protein V | - |
| PSH79_RS05980 (PSH79_05980) | - | 1346888..1347286 (+) | 399 | WP_095188878.1 | phage GP46 family protein | - |
| PSH79_RS05985 (PSH79_05985) | - | 1347276..1348322 (+) | 1047 | WP_305441687.1 | baseplate J/gp47 family protein | - |
| PSH79_RS05990 (PSH79_05990) | - | 1348310..1348909 (+) | 600 | WP_305441689.1 | YmfQ family protein | - |
| PSH79_RS05995 (PSH79_05995) | - | 1348924..1349799 (+) | 876 | WP_305441691.1 | phage tail protein | - |
| PSH79_RS06000 (PSH79_06000) | - | 1349817..1350236 (+) | 420 | WP_305441693.1 | tail fiber assembly protein | - |
| PSH79_RS06005 (PSH79_06005) | - | 1350307..1351464 (+) | 1158 | WP_305441695.1 | phage tail protein | - |
| PSH79_RS06010 (PSH79_06010) | - | 1351461..1351976 (+) | 516 | WP_305441697.1 | phage tail protein | - |
| PSH79_RS06015 (PSH79_06015) | - | 1352107..1353198 (+) | 1092 | WP_305441699.1 | phage tail protein | - |
| PSH79_RS06020 (PSH79_06020) | - | 1353207..1353773 (+) | 567 | WP_305441701.1 | tail fiber assembly protein | - |
| PSH79_RS06025 (PSH79_06025) | - | 1353795..1354688 (+) | 894 | WP_305441703.1 | phage tail protein | - |
| PSH79_RS06030 (PSH79_06030) | - | 1354689..1355135 (+) | 447 | WP_305441706.1 | phage tail assembly chaperone | - |
| PSH79_RS06035 (PSH79_06035) | - | 1355249..1355815 (+) | 567 | WP_305441707.1 | glycoside hydrolase family 19 protein | - |
| PSH79_RS06040 (PSH79_06040) | - | 1355794..1356312 (+) | 519 | WP_305441708.1 | lysis system i-spanin subunit Rz | - |
| PSH79_RS06045 (PSH79_06045) | - | 1356381..1356881 (+) | 501 | WP_305441709.1 | CinA family protein | - |
| PSH79_RS06050 (PSH79_06050) | recA | 1356965..1358023 (+) | 1059 | WP_095188892.1 | recombinase RecA | Machinery gene |
| PSH79_RS06055 (PSH79_06055) | recX | 1358033..1358500 (+) | 468 | WP_103302971.1 | recombination regulator RecX | - |
| PSH79_RS06060 (PSH79_06060) | - | 1358558..1359676 (-) | 1119 | WP_305441712.1 | LOG family protein | - |
| PSH79_RS06065 (PSH79_06065) | - | 1360028..1360222 (+) | 195 | WP_003222272.1 | hypothetical protein | - |
| PSH79_RS06070 (PSH79_06070) | - | 1360223..1360648 (-) | 426 | WP_305441713.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| PSH79_RS06075 (PSH79_06075) | - | 1360838..1361584 (+) | 747 | WP_305441714.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| PSH79_RS06080 (PSH79_06080) | erdR | 1361808..1362458 (+) | 651 | WP_305441715.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37521.09 Da Isoelectric Point: 5.5392
>NTDB_id=785283 PSH79_RS06050 WP_095188892.1 1356965..1358023(+) (recA) [Pseudomonas sp. FP2196]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLAPAADVKASATRDKVDDMAEADIDV
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLAPAADVKASATRDKVDDMAEADIDV
Nucleotide
Download Length: 1059 bp
>NTDB_id=785283 PSH79_RS06050 WP_095188892.1 1356965..1358023(+) (recA) [Pseudomonas sp. FP2196]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCATCCATCTCCACTGGCTCTCTGGGTCTGGACATTGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCTGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCAGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTGGCTGCACTGGTACCGAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCATCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCCTCGCCGTTCCGTCAGGCTGAGTTCCAGATCCTTTATGGCAAGGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCTGGCGCATGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCTGCCAAGCTCGAGAAG
CAACTGCGTGACAAGCTGCTGGCGCCAGCAGCAGACGTCAAGGCTTCGGCGACCCGTGACAAGGTCGACGATATGGCCGA
GGCCGACATCGACGTTTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCATCCATCTCCACTGGCTCTCTGGGTCTGGACATTGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCTGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCAGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTGGCTGCACTGGTACCGAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCATCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCCTCGCCGTTCCGTCAGGCTGAGTTCCAGATCCTTTATGGCAAGGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCTGGCGCATGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCTGCCAAGCTCGAGAAG
CAACTGCGTGACAAGCTGCTGGCGCCAGCAGCAGACGTCAAGGCTTCGGCGACCCGTGACAAGGTCGACGATATGGCCGA
GGCCGACATCGACGTTTGA
Similar proteins
Only experimentally validated proteins are listed.