Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PSH86_RS05980 | Genome accession | NZ_CP117440 |
| Coordinates | 1372664..1373716 (+) | Length | 350 a.a. |
| NCBI ID | WP_003198351.1 | Uniprot ID | A0A1I5E008 |
| Organism | Pseudomonas sp. FP2300 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1346114..1379638 | 1372664..1373716 | within | 0 |
Gene organization within MGE regions
Location: 1346114..1379638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH86_RS05835 (PSH86_05835) | - | 1346114..1346959 (+) | 846 | WP_116834186.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PSH86_RS05840 (PSH86_05840) | rpoS | 1347066..1348073 (+) | 1008 | WP_047227588.1 | RNA polymerase sigma factor RpoS | - |
| PSH86_RS05845 (PSH86_05845) | fdxA | 1348564..1348887 (-) | 324 | WP_109756621.1 | ferredoxin FdxA | - |
| PSH86_RS05850 (PSH86_05850) | mutS | 1349031..1351598 (-) | 2568 | WP_249016020.1 | DNA mismatch repair protein MutS | - |
| PSH86_RS05855 (PSH86_05855) | - | 1351942..1353117 (+) | 1176 | WP_305488487.1 | IS481 family transposase | - |
| PSH86_RS05860 (PSH86_05860) | - | 1353817..1354173 (-) | 357 | WP_305488489.1 | DUF6124 family protein | - |
| PSH86_RS05865 (PSH86_05865) | - | 1354926..1355660 (+) | 735 | WP_003198297.1 | XRE family transcriptional regulator | - |
| PSH86_RS05870 (PSH86_05870) | - | 1356121..1356279 (+) | 159 | WP_109755646.1 | Com family DNA-binding transcriptional regulator | - |
| PSH86_RS05875 (PSH86_05875) | - | 1356318..1356899 (+) | 582 | WP_305488492.1 | DUF642 domain-containing protein | - |
| PSH86_RS05880 (PSH86_05880) | - | 1356968..1357318 (+) | 351 | WP_109755648.1 | phage holin family protein | - |
| PSH86_RS05885 (PSH86_05885) | - | 1357366..1357878 (+) | 513 | WP_109755649.1 | hypothetical protein | - |
| PSH86_RS05890 (PSH86_05890) | - | 1357882..1358493 (+) | 612 | WP_305488497.1 | phage baseplate assembly protein V | - |
| PSH86_RS05895 (PSH86_05895) | - | 1358505..1358837 (+) | 333 | WP_076386161.1 | phage baseplate protein | - |
| PSH86_RS05900 (PSH86_05900) | - | 1358834..1359829 (+) | 996 | WP_305488500.1 | baseplate J/gp47 family protein | - |
| PSH86_RS05905 (PSH86_05905) | - | 1359826..1360461 (+) | 636 | WP_305488503.1 | phage tail protein I | - |
| PSH86_RS05910 (PSH86_05910) | - | 1360462..1362750 (+) | 2289 | WP_305488506.1 | phage tail protein | - |
| PSH86_RS05915 (PSH86_05915) | - | 1362753..1363181 (+) | 429 | WP_305488508.1 | phage tail assembly chaperone | - |
| PSH86_RS05920 (PSH86_05920) | - | 1363282..1363491 (+) | 210 | WP_134923011.1 | hypothetical protein | - |
| PSH86_RS05925 (PSH86_05925) | - | 1363494..1364660 (+) | 1167 | WP_163855149.1 | phage tail protein | - |
| PSH86_RS05930 (PSH86_05930) | - | 1364660..1365166 (+) | 507 | WP_109755659.1 | phage major tail tube protein | - |
| PSH86_RS05935 (PSH86_05935) | - | 1365327..1365893 (+) | 567 | WP_305488520.1 | phage tail assembly protein | - |
| PSH86_RS05940 (PSH86_05940) | - | 1366022..1368202 (+) | 2181 | WP_305488523.1 | phage tail tape measure protein | - |
| PSH86_RS05945 (PSH86_05945) | - | 1368202..1368585 (+) | 384 | WP_134923014.1 | phage tail protein | - |
| PSH86_RS05950 (PSH86_05950) | - | 1368578..1368790 (+) | 213 | WP_063322730.1 | tail protein X | - |
| PSH86_RS05955 (PSH86_05955) | - | 1368800..1369816 (+) | 1017 | WP_176688538.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| PSH86_RS05960 (PSH86_05960) | - | 1369871..1370680 (-) | 810 | WP_305488531.1 | lipopolysaccharide biosynthesis protein | - |
| PSH86_RS05965 (PSH86_05965) | - | 1370952..1371497 (+) | 546 | WP_116831590.1 | glycoside hydrolase family 19 protein | - |
| PSH86_RS05970 (PSH86_05970) | - | 1371509..1372009 (+) | 501 | WP_370873799.1 | lysis system i-spanin subunit Rz | - |
| PSH86_RS05975 (PSH86_05975) | - | 1372080..1372580 (+) | 501 | WP_305488537.1 | CinA family protein | - |
| PSH86_RS05980 (PSH86_05980) | recA | 1372664..1373716 (+) | 1053 | WP_003198351.1 | recombinase RecA | Machinery gene |
| PSH86_RS05985 (PSH86_05985) | recX | 1373725..1374192 (+) | 468 | WP_018607949.1 | recombination regulator RecX | - |
| PSH86_RS05990 (PSH86_05990) | - | 1374238..1375356 (-) | 1119 | WP_305488541.1 | TIGR00730 family Rossman fold protein | - |
| PSH86_RS05995 (PSH86_05995) | - | 1375797..1375991 (+) | 195 | WP_109755670.1 | hypothetical protein | - |
| PSH86_RS06000 (PSH86_06000) | - | 1375992..1376414 (-) | 423 | WP_109755671.1 | quorum-sensing-regulated virulence factor family protein | - |
| PSH86_RS06005 (PSH86_06005) | - | 1376599..1377345 (+) | 747 | WP_212801953.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| PSH86_RS06010 (PSH86_06010) | erdR | 1377559..1378212 (+) | 654 | WP_003198362.1 | response regulator transcription factor ErdR | - |
| PSH86_RS06015 (PSH86_06015) | - | 1378285..1378647 (+) | 363 | WP_003184792.1 | diacylglycerol kinase | - |
| PSH86_RS06020 (PSH86_06020) | - | 1378652..1379578 (-) | 927 | WP_162893797.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37232.69 Da Isoelectric Point: 5.5226
>NTDB_id=785154 PSH86_RS05980 WP_003198351.1 1372664..1373716(+) (recA) [Pseudomonas sp. FP2300]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKSVANRETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKSVANRETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=785154 PSH86_RS05980 WP_003198351.1 1372664..1373716(+) (recA) [Pseudomonas sp. FP2300]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCGCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAGTCGTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATATGCCGGCAAACTGGG
GGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTCGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCTAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAAAAATCCGGCGCATGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGATAATCCGGAAGTTGCCGCGGCTCTCGAGAAG
CAACTGCGTGACAAGCTGCTGAGCCCAGTGGCAGACGTCAAGTCAGTCGCCAACCGCGAGACCGCTGACGACCTGGCTGA
CGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCGCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAGTCGTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATATGCCGGCAAACTGGG
GGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTCGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCTAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAAAAATCCGGCGCATGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGATAATCCGGAAGTTGCCGCGGCTCTCGAGAAG
CAACTGCGTGACAAGCTGCTGAGCCCAGTGGCAGACGTCAAGTCAGTCGCCAACCGCGAGACCGCTGACGACCTGGCTGA
CGCTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.