Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PSH95_RS06460 | Genome accession | NZ_CP117433 |
| Coordinates | 1411562..1412620 (+) | Length | 352 a.a. |
| NCBI ID | WP_003189042.1 | Uniprot ID | A0A7Y7ZLK5 |
| Organism | Pseudomonas simiae strain FP55 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1396894..1412620 | 1411562..1412620 | within | 0 |
Gene organization within MGE regions
Location: 1396894..1412620
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH95_RS06340 (PSH95_06340) | - | 1396894..1397382 (-) | 489 | WP_010212724.1 | Panacea domain-containing protein | - |
| PSH95_RS06345 (PSH95_06345) | - | 1397650..1398384 (+) | 735 | WP_010212723.1 | XRE family transcriptional regulator | - |
| PSH95_RS06350 (PSH95_06350) | - | 1398534..1398731 (+) | 198 | WP_021492473.1 | hypothetical protein | - |
| PSH95_RS06355 (PSH95_06355) | - | 1398982..1399326 (+) | 345 | WP_010212721.1 | phage holin family protein | - |
| PSH95_RS06360 (PSH95_06360) | - | 1399348..1399863 (+) | 516 | WP_010212719.1 | hypothetical protein | - |
| PSH95_RS06365 (PSH95_06365) | - | 1399867..1400480 (+) | 614 | Protein_1247 | phage baseplate assembly protein V | - |
| PSH95_RS06370 (PSH95_06370) | - | 1400490..1400822 (+) | 333 | WP_010212717.1 | phage baseplate protein | - |
| PSH95_RS06375 (PSH95_06375) | - | 1400819..1401814 (+) | 996 | WP_198729787.1 | baseplate J/gp47 family protein | - |
| PSH95_RS06380 (PSH95_06380) | - | 1401811..1402449 (+) | 639 | WP_305437047.1 | phage tail protein I | - |
| PSH95_RS06385 (PSH95_06385) | - | 1402446..1402977 (+) | 532 | Protein_1251 | hypothetical protein | - |
| PSH95_RS06390 (PSH95_06390) | - | 1403026..1403808 (+) | 783 | WP_305437048.1 | phage tail protein | - |
| PSH95_RS06395 (PSH95_06395) | - | 1403810..1404112 (+) | 303 | WP_010212711.1 | hypothetical protein | - |
| PSH95_RS06400 (PSH95_06400) | - | 1404201..1404374 (+) | 174 | WP_010212710.1 | hypothetical protein | - |
| PSH95_RS06405 (PSH95_06405) | - | 1404377..1405543 (+) | 1167 | WP_010212708.1 | tail protein | - |
| PSH95_RS06410 (PSH95_06410) | - | 1405543..1406049 (+) | 507 | WP_010212707.1 | phage major tail tube protein | - |
| PSH95_RS06415 (PSH95_06415) | - | 1406102..1406674 (+) | 573 | WP_010212706.1 | phage tail assembly protein | - |
| PSH95_RS06420 (PSH95_06420) | - | 1406671..1406796 (+) | 126 | WP_010212704.1 | hypothetical protein | - |
| PSH95_RS06425 (PSH95_06425) | - | 1406802..1408268 (+) | 1467 | WP_305437050.1 | tail tape measure protein | - |
| PSH95_RS06430 (PSH95_06430) | - | 1408268..1408651 (+) | 384 | WP_010212701.1 | phage tail protein | - |
| PSH95_RS06435 (PSH95_06435) | - | 1408644..1408856 (+) | 213 | WP_021492460.1 | tail protein X | - |
| PSH95_RS06440 (PSH95_06440) | - | 1408866..1409873 (+) | 1008 | WP_305437052.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| PSH95_RS06445 (PSH95_06445) | - | 1409880..1410437 (+) | 558 | WP_010212696.1 | glycoside hydrolase family 19 protein | - |
| PSH95_RS06450 (PSH95_06450) | - | 1410425..1410895 (+) | 471 | WP_029529227.1 | lysis system i-spanin subunit Rz | - |
| PSH95_RS06455 (PSH95_06455) | - | 1410977..1411477 (+) | 501 | WP_010212691.1 | CinA family protein | - |
| PSH95_RS06460 (PSH95_06460) | recA | 1411562..1412620 (+) | 1059 | WP_003189042.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37580.12 Da Isoelectric Point: 5.3036
>NTDB_id=784985 PSH95_RS06460 WP_003189042.1 1411562..1412620(+) (recA) [Pseudomonas simiae strain FP55]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=784985 PSH95_RS06460 WP_003189042.1 1411562..1412620(+) (recA) [Pseudomonas simiae strain FP55]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTCATTGCC
CAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGCAAACTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGTGAT
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAAATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTGGGTAGTGAA
ACCCGCGTCAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTCGTCGAGAAATCGGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGACATTGCTGCCACACTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCGCCGCTCCAGACGTGAAAGCTGCCGCCAACCGCGAGCCGGTTGAAGAAGTGGAAGA
AGCTGATACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTCATTGCC
CAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGCAAACTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGTGAT
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAAATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTGGGTAGTGAA
ACCCGCGTCAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTCGTCGAGAAATCGGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGACATTGCTGCCACACTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCGCCGCTCCAGACGTGAAAGCTGCCGCCAACCGCGAGCCGGTTGAAGAAGTGGAAGA
AGCTGATACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.