Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PSH84_RS10550 | Genome accession | NZ_CP117425 |
| Coordinates | 2334511..2335563 (+) | Length | 350 a.a. |
| NCBI ID | WP_014336835.1 | Uniprot ID | A0A0F4XHC7 |
| Organism | Pseudomonas beijingensis strain FP830 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2311021..2336039 | 2334511..2335563 | within | 0 |
Gene organization within MGE regions
Location: 2311021..2336039
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH84_RS10395 (PSH84_10395) | mutS | 2311021..2313588 (-) | 2568 | WP_175459538.1 | DNA mismatch repair protein MutS | - |
| PSH84_RS10400 (PSH84_10400) | - | 2314072..2315094 (-) | 1023 | WP_305470327.1 | IS110 family transposase | - |
| PSH84_RS10405 (PSH84_10405) | - | 2315624..2315977 (-) | 354 | WP_305482822.1 | DUF6124 family protein | - |
| PSH84_RS10410 (PSH84_10410) | - | 2316595..2317329 (+) | 735 | WP_305471158.1 | XRE family transcriptional regulator | - |
| PSH84_RS10415 (PSH84_10415) | - | 2317842..2318261 (+) | 420 | WP_122565442.1 | tail fiber assembly protein | - |
| PSH84_RS10420 (PSH84_10420) | - | 2318433..2318615 (+) | 183 | WP_305469948.1 | Com family DNA-binding transcriptional regulator | - |
| PSH84_RS10425 (PSH84_10425) | - | 2318636..2319280 (+) | 645 | WP_122565441.1 | hypothetical protein | - |
| PSH84_RS10430 (PSH84_10430) | - | 2319310..2319738 (+) | 429 | WP_305469949.1 | hypothetical protein | - |
| PSH84_RS10435 (PSH84_10435) | - | 2319864..2320052 (+) | 189 | WP_122565439.1 | Com family DNA-binding transcriptional regulator | - |
| PSH84_RS10440 (PSH84_10440) | - | 2320057..2320887 (+) | 831 | WP_122565438.1 | putidacin L1 family lectin-like bacteriocin | - |
| PSH84_RS10445 (PSH84_10445) | - | 2321098..2321448 (+) | 351 | WP_305469950.1 | phage holin family protein | - |
| PSH84_RS10450 (PSH84_10450) | - | 2321485..2321997 (+) | 513 | WP_305469952.1 | hypothetical protein | - |
| PSH84_RS10455 (PSH84_10455) | - | 2322001..2322612 (+) | 612 | WP_122565434.1 | phage baseplate assembly protein V | - |
| PSH84_RS10460 (PSH84_10460) | - | 2322624..2322956 (+) | 333 | WP_014336817.1 | phage baseplate protein | - |
| PSH84_RS10465 (PSH84_10465) | - | 2322953..2323948 (+) | 996 | WP_305482824.1 | baseplate J/gp47 family protein | - |
| PSH84_RS10470 (PSH84_10470) | - | 2323945..2324589 (+) | 645 | WP_305469955.1 | phage tail protein I | - |
| PSH84_RS10475 (PSH84_10475) | - | 2324586..2325116 (+) | 531 | WP_122565430.1 | hypothetical protein | - |
| PSH84_RS10480 (PSH84_10480) | - | 2325141..2325761 (+) | 621 | WP_122565429.1 | hypothetical protein | - |
| PSH84_RS10485 (PSH84_10485) | - | 2325771..2326028 (+) | 258 | WP_122565428.1 | tail fiber assembly protein | - |
| PSH84_RS10490 (PSH84_10490) | - | 2326115..2326342 (+) | 228 | WP_122565427.1 | hypothetical protein | - |
| PSH84_RS10495 (PSH84_10495) | - | 2326345..2327511 (+) | 1167 | WP_305482826.1 | phage tail protein | - |
| PSH84_RS10500 (PSH84_10500) | - | 2327511..2328017 (+) | 507 | WP_305482828.1 | phage major tail tube protein | - |
| PSH84_RS10505 (PSH84_10505) | - | 2328155..2328730 (+) | 576 | WP_305482830.1 | phage tail assembly protein | - |
| PSH84_RS10510 (PSH84_10510) | - | 2328859..2330202 (+) | 1344 | WP_305482831.1 | phage tail tape measure protein | - |
| PSH84_RS10515 (PSH84_10515) | - | 2330607..2331032 (+) | 426 | WP_305482832.1 | glycine zipper domain-containing protein | - |
| PSH84_RS10520 (PSH84_10520) | - | 2331032..2331415 (+) | 384 | WP_305482833.1 | phage tail protein | - |
| PSH84_RS10525 (PSH84_10525) | - | 2331408..2331620 (+) | 213 | WP_063322730.1 | tail protein X | - |
| PSH84_RS10530 (PSH84_10530) | - | 2331630..2332646 (+) | 1017 | WP_122565420.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| PSH84_RS10535 (PSH84_10535) | - | 2332927..2333352 (+) | 426 | WP_122565418.1 | cell wall hydrolase | - |
| PSH84_RS10540 (PSH84_10540) | - | 2333349..2333855 (+) | 507 | WP_122565417.1 | lysis system i-spanin subunit Rz | - |
| PSH84_RS10545 (PSH84_10545) | - | 2333927..2334427 (+) | 501 | WP_122565416.1 | CinA family protein | - |
| PSH84_RS10550 (PSH84_10550) | recA | 2334511..2335563 (+) | 1053 | WP_014336835.1 | recombinase RecA | Machinery gene |
| PSH84_RS10555 (PSH84_10555) | recX | 2335572..2336039 (+) | 468 | WP_305482834.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37256.75 Da Isoelectric Point: 5.5226
>NTDB_id=784780 PSH84_RS10550 WP_014336835.1 2334511..2335563(+) (recA) [Pseudomonas beijingensis strain FP830]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKSVANREPVDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKSVANREPVDDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=784780 PSH84_RS10550 WP_014336835.1 2334511..2335563(+) (recA) [Pseudomonas beijingensis strain FP830]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTTGGCATTGGCG
GTCTGCCAAAAGGCCGAATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTTGAAATCACCGACATGCTGGTACGTT
CCAACGCGGTCGACGTGATCATCGTCGACTCCGTGGCGGCATTGGTGCCAAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCCCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAGCCCGGAAACCACCACTGGTGGTAACGCAC
TGAAGTTCTACGCCTCGGTTCGCCTCGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTGGTTGGCAGTGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAATTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTTGAGAAGTCGGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCTAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAGTTGCCGCTGCTCTCGAGAAG
CAACTGCGTGACAAACTGTTGAGCCCGGTTGCAGACGTCAAGTCCGTGGCTAATCGCGAGCCCGTTGACGACCTGGCTGA
CGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTTGGCATTGGCG
GTCTGCCAAAAGGCCGAATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTTGAAATCACCGACATGCTGGTACGTT
CCAACGCGGTCGACGTGATCATCGTCGACTCCGTGGCGGCATTGGTGCCAAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCCCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAGCCCGGAAACCACCACTGGTGGTAACGCAC
TGAAGTTCTACGCCTCGGTTCGCCTCGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTGGTTGGCAGTGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAATTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTTGAGAAGTCGGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCTAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAGTTGCCGCTGCTCTCGAGAAG
CAACTGCGTGACAAACTGTTGAGCCCGGTTGCAGACGTCAAGTCCGTGGCTAATCGCGAGCCCGTTGACGACCTGGCTGA
CGCTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.