Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IL310_RS08390 Genome accession   NZ_CP117409
Coordinates   1258823..1259686 (+) Length   287 a.a.
NCBI ID   WP_242481536.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1253823..1264686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS08365 (IL310_08370) - 1253963..1255102 (+) 1140 WP_201248818.1 ArgE/DapE family deacylase -
  IL310_RS08370 (IL310_08375) - 1255259..1255822 (-) 564 WP_201248853.1 recombinase family protein -
  IL310_RS08375 (IL310_08380) - 1255785..1256724 (+) 940 Protein_1238 IS3-like element IS-LL6 family transposase -
  IL310_RS08380 (IL310_08385) - 1256968..1258419 (+) 1452 WP_201249010.1 Y-family DNA polymerase -
  IL310_RS08385 (IL310_08390) - 1258416..1258808 (+) 393 WP_201179620.1 hypothetical protein -
  IL310_RS08390 (IL310_08395) recA 1258823..1259686 (+) 864 WP_242481536.1 DNA recombination/repair protein RecA Machinery gene
  IL310_RS08395 (IL310_08400) - 1259713..1259847 (+) 135 WP_274448931.1 hypothetical protein -
  IL310_RS08400 (IL310_08405) - 1260087..1260537 (+) 451 Protein_1243 MarR family transcriptional regulator -
  IL310_RS08405 (IL310_08410) - 1260540..1261490 (+) 951 Protein_1244 zinc-binding dehydrogenase -
  IL310_RS08410 (IL310_08415) - 1262050..1262469 (+) 420 WP_201179618.1 MerR family transcriptional regulator -
  IL310_RS08415 (IL310_08420) - 1262543..1263409 (+) 867 WP_201179617.1 aldo/keto reductase -
  IL310_RS08420 (IL310_08425) - 1263409..1264086 (+) 678 WP_201179616.1 flavodoxin -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31031.52 Da        Isoelectric Point: 7.3537

>NTDB_id=784644 IL310_RS08390 WP_242481536.1 1258823..1259686(+) (recA) [Lactococcus lactis strain LB7]
MEQPNYTPRRVHKINDPEEKKLAILKATKSIERKFGSNTILDDEGKAAQHVQALPTGILSLDCAIGIGGYPKGRLIELFG
AESSGKTTVALQAVAETQKSGGYVAYIDAENSLDIEYAENLGVKAESLIFAQPDTGEEAFYMINEFVKTGAFDLIVVDSV
AALTPASEIDGVSIPGQQAKMMSEQLSKLVSKVNQTKTVIIFINQVRSTMSGLFLNKETTPGGSALKFYSSVRIKVKSGE
KIKDGIDTIGKKTTLHTVKNKVSAPYKKPTVINVFGDGFSQEIDVVH

Nucleotide


Download         Length: 864 bp        

>NTDB_id=784644 IL310_RS08390 WP_242481536.1 1258823..1259686(+) (recA) [Lactococcus lactis strain LB7]
ATGGAACAGCCAAATTATACTCCGAGACGAGTACATAAAATAAATGACCCAGAAGAAAAGAAATTGGCTATCCTTAAAGC
CACAAAATCAATTGAGAGAAAATTTGGTTCAAATACTATCTTAGATGATGAAGGAAAGGCAGCCCAACATGTTCAGGCGC
TTCCTACTGGCATTCTGTCATTAGATTGCGCCATTGGTATTGGTGGTTATCCAAAAGGTCGCCTTATAGAACTCTTTGGG
GCTGAATCTTCAGGTAAAACGACTGTAGCGCTTCAAGCTGTAGCTGAAACTCAAAAAAGTGGTGGTTATGTGGCTTACAT
CGATGCTGAAAACTCACTTGATATTGAGTACGCTGAAAATCTAGGGGTAAAAGCCGAAAGCCTTATCTTTGCACAACCAG
ATACAGGCGAAGAAGCCTTTTATATGATTAATGAATTTGTCAAAACAGGAGCCTTTGATTTAATAGTTGTTGATTCGGTT
GCTGCTCTGACACCTGCTTCAGAAATAGATGGGGTAAGTATTCCAGGTCAGCAAGCTAAAATGATGTCAGAACAGCTCTC
TAAGCTTGTTTCAAAAGTAAACCAAACAAAGACGGTCATTATCTTCATCAATCAAGTGCGTTCAACCATGAGTGGACTAT
TCTTAAATAAAGAAACCACTCCAGGAGGGTCAGCACTAAAATTTTATTCTTCTGTACGGATTAAAGTTAAATCAGGAGAA
AAAATCAAAGATGGCATTGATACTATCGGTAAGAAAACCACGCTTCATACCGTTAAGAATAAGGTATCAGCTCCATATAA
AAAGCCAACTGTTATTAATGTATTTGGTGATGGATTCTCTCAAGAAATAGATGTTGTACATTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(24-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

48.763

98.606

0.481
  recA Streptococcus mitis SK321

48.763

98.606

0.481
  recA Streptococcus pneumoniae TIGR4

48.057

98.606

0.474
  recA Streptococcus pneumoniae Rx1

48.057

98.606

0.474
  recA Streptococcus pneumoniae D39

48.057

98.606

0.474
  recA Streptococcus pneumoniae R6

48.057

98.606

0.474
  recA Streptococcus pyogenes NZ131

49.275

96.167

0.474
  recA Streptococcus mutans UA159

48.913

96.167

0.47
  recA Bacillus subtilis subsp. subtilis str. 168

49.077

94.425

0.463
  recA Lactococcus lactis subsp. cremoris KW2

49.071

93.728

0.46
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.464

96.167

0.456
  recA Latilactobacillus sakei subsp. sakei 23K

48.162

94.774

0.456
  recA Acinetobacter baumannii D1279779

46.816

93.031

0.436
  recA Helicobacter pylori strain NCTC11637

44.689

95.122

0.425
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

44.689

95.122

0.425
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

44.689

95.122

0.425
  recA Acinetobacter baylyi ADP1

45.693

93.031

0.425
  recA Vibrio cholerae strain A1552

44.485

94.774

0.422
  recA Vibrio cholerae O1 biovar El Tor strain E7946

44.485

94.774

0.422
  recA Helicobacter pylori 26695

44.322

95.122

0.422
  recA Glaesserella parasuis strain SC1401

44.238

93.728

0.415
  recA Ralstonia pseudosolanacearum GMI1000

45.946

90.244

0.415
  recA Neisseria gonorrhoeae MS11

44.615

90.592

0.404
  recA Neisseria gonorrhoeae strain FA1090

44.615

90.592

0.404
  recA Neisseria gonorrhoeae MS11

44.615

90.592

0.404
  recA Pseudomonas stutzeri DSM 10701

40.441

94.774

0.383