Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LYZ37_RS12860 Genome accession   NZ_CP117029
Coordinates   2803543..2804589 (-) Length   348 a.a.
NCBI ID   WP_272785739.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2798543..2809589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS12845 (LYZ37_12845) - 2798669..2799202 (-) 534 WP_272785735.1 hypothetical protein -
  LYZ37_RS12850 (LYZ37_12850) - 2799204..2801507 (-) 2304 WP_272785737.1 tyrosine-type recombinase/integrase -
  LYZ37_RS12855 (LYZ37_12855) - 2801507..2803543 (-) 2037 WP_272785738.1 hypothetical protein -
  LYZ37_RS12860 (LYZ37_12860) recA 2803543..2804589 (-) 1047 WP_272785739.1 recombinase RecA Machinery gene
  LYZ37_RS12865 (LYZ37_12865) recA 2804775..2805392 (-) 618 Protein_2474 recombinase RecA -
  LYZ37_RS12870 (LYZ37_12870) pncC 2805584..2806078 (-) 495 WP_272785740.1 nicotinamide-nucleotide amidase -
  LYZ37_RS12875 (LYZ37_12875) mutS 2806206..2808743 (+) 2538 WP_272787173.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37656.17 Da        Isoelectric Point: 5.0686

>NTDB_id=782118 LYZ37_RS12860 WP_272785739.1 2803543..2804589(-) (recA) [Vibrio tubiashii strain FP17]
MDDNKQKALAAALGQIEKQFGKGSIMKLGDNRTMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEVIA
AAQKQGKTCAFIDAEHALDPIYARKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNRYGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACKFIEEKSHIAEELDI
KLRELLLTPAVEQLEETENKDVAEDDAF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=782118 LYZ37_RS12860 WP_272785739.1 2803543..2804589(-) (recA) [Vibrio tubiashii strain FP17]
ATGGACGATAATAAGCAAAAAGCATTAGCTGCTGCGCTAGGCCAAATTGAAAAACAATTTGGTAAGGGTTCAATCATGAA
GCTAGGCGACAATCGCACGATGGACGTAGAAACTATCTCTACAGGTTCCCTATCTTTAGATGTCGCTTTAGGCGCTGGTG
GTCTCCCGATGGGGCGTATCGTTGAAATCTATGGTCCAGAATCTTCAGGTAAAACCACATTAACTTTGGAAGTGATTGCT
GCCGCTCAAAAACAAGGCAAAACTTGTGCGTTCATTGATGCCGAGCATGCGCTGGACCCAATTTATGCTCGAAAGCTTGG
TGTTGATATTGATAGCCTTCTAGTTTCTCAACCTGATACTGGTGAGCAGGCTTTAGAGATCTGTGATGCGCTAGCTCGCT
CTGGTGCTATTGATGTTTTGGTTGTTGATTCTGTGGCTGCGTTAACGCCTAAGGCAGAAATTGAAGGAGAGATGGGTGAT
AGCCATATGGGGCTTCAAGCCCGCATGCTTTCTCAAGCGATGCGTAAGCTTACAGGTAACTTAAAACAATCAAATTGCAT
GTGCATTTTTATTAACCAAATTCGCATGAAAATAGGCGTAATGTTCGGGAATCCTGAAACTACAACAGGTGGGAACGCAT
TAAAATTCTACGCTTCAGTACGCTTAGATATTCGCCGTACAGGATCCATCAAGGAAGGTGATGAGGTCGTTGGCAATGAA
ACTCGCATCAAAGTTGTTAAGAATAAAATTGCAGCGCCGTTCAAGCAGGCTGAGACTCAAATTTTGTATGGCAAGGGCTT
CAACCGTTATGGTGAGCTGATTGACCTAGGTGTAAAGCACAAGTTAGTTGAGAAAGCTGGTGCTTGGTATAGTTATCAAG
GCGATAAGATTGGTCAAGGTAAGGCTAATGCATGTAAGTTTATTGAAGAAAAGAGTCATATCGCTGAAGAACTTGATATT
AAGCTACGAGAATTGCTTCTTACTCCGGCAGTAGAACAGCTTGAAGAAACTGAAAATAAAGACGTTGCCGAGGATGATGC
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

86.207

100

0.862
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.207

100

0.862
  recA Acinetobacter baumannii D1279779

73.043

99.138

0.724
  recA Acinetobacter baylyi ADP1

73.607

97.989

0.721
  recA Pseudomonas stutzeri DSM 10701

72.543

99.425

0.721
  recA Glaesserella parasuis strain SC1401

67.151

98.851

0.664
  recA Ralstonia pseudosolanacearum GMI1000

70.552

93.678

0.661
  recA Neisseria gonorrhoeae MS11

69.632

93.678

0.652
  recA Neisseria gonorrhoeae MS11

69.632

93.678

0.652
  recA Neisseria gonorrhoeae strain FA1090

69.632

93.678

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.115

0.58
  recA Streptococcus pneumoniae R6

58.772

98.276

0.578
  recA Streptococcus pneumoniae TIGR4

58.772

98.276

0.578
  recA Streptococcus pneumoniae Rx1

58.772

98.276

0.578
  recA Streptococcus pneumoniae D39

58.772

98.276

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.009

91.667

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.241

0.575
  recA Helicobacter pylori 26695

61.231

93.391

0.572
  recA Helicobacter pylori strain NCTC11637

60.923

93.391

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.857

90.517

0.569
  recA Streptococcus mitis NCTC 12261

56.772

99.713

0.566
  recA Streptococcus mitis SK321

56.772

99.713

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

92.241

0.557
  recA Streptococcus mutans UA159

59.692

93.391

0.557
  recA Streptococcus pyogenes NZ131

59.385

93.391

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.816

0.537