Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PPK11_RS04400 Genome accession   NZ_CP117024
Coordinates   927641..928684 (-) Length   347 a.a.
NCBI ID   WP_000952108.1    Uniprot ID   A0AB33Z7Z7
Organism   Helicobacter pylori strain 444A6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 922641..933684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS04370 - 922882..924000 (+) 1119 WP_273895597.1 glycosyltransferase family 8 protein -
  PPK11_RS04375 - 923997..924953 (-) 957 WP_000952278.1 PDC sensor domain-containing protein -
  PPK11_RS04380 - 924975..925463 (-) 489 WP_001924385.1 shikimate kinase -
  PPK11_RS04385 - 925468..926064 (-) 597 WP_273899207.1 AMIN domain-containing protein -
  PPK11_RS04390 - 926081..926356 (-) 276 WP_273895598.1 hypothetical protein -
  PPK11_RS04395 eno 926349..927629 (-) 1281 WP_273895599.1 phosphopyruvate hydratase -
  PPK11_RS04400 recA 927641..928684 (-) 1044 WP_000952108.1 recombinase RecA Machinery gene
  PPK11_RS04405 - 928783..929646 (+) 864 WP_273895609.1 menaquinone biosynthesis family protein -
  PPK11_RS04410 - 929643..930410 (-) 768 WP_273895610.1 hypothetical protein -
  PPK11_RS04415 - 930488..931078 (-) 591 WP_273895612.1 hypothetical protein -
  PPK11_RS04420 - 931090..931674 (-) 585 WP_273895614.1 hypothetical protein -
  PPK11_RS04425 - 931775..931981 (-) 207 WP_000670506.1 DUF4006 family protein -
  PPK11_RS04430 ccoP 931992..932870 (-) 879 WP_273895684.1 cytochrome-c oxidase, cbb3-type subunit III -
  PPK11_RS04435 - 932872..933090 (-) 219 WP_001860815.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37653.40 Da        Isoelectric Point: 5.3408

>NTDB_id=782068 PPK11_RS04400 WP_000952108.1 927641..928684(-) (recA) [Helicobacter pylori strain 444A6]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=782068 PPK11_RS04400 WP_000952108.1 927641..928684(-) (recA) [Helicobacter pylori strain 444A6]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATTATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCACATT
ATTGCAGAATGCCAAAAAAATGGTGGCGTGTGCGCGTTCATTGACGCTGAACATGCCCTAGACGTGTATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCAAGCACGGGCGAAGAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTGGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
TACTACTTTAATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCAGCTTTAAAGCAAAACGAACAGCATATC
GGTAATAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGACTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTATCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTACTGAAAGAAGATAAAGCCCTAGCGGACGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Helicobacter pylori 26695

98.559

100

0.986
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.354

94.524

0.741
  recA Neisseria gonorrhoeae MS11

66.154

93.66

0.62
  recA Neisseria gonorrhoeae MS11

66.154

93.66

0.62
  recA Neisseria gonorrhoeae strain FA1090

66.154

93.66

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.554

95.677

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

64.615

93.66

0.605
  recA Acinetobacter baumannii D1279779

63.609

94.236

0.599
  recA Acinetobacter baylyi ADP1

63.303

94.236

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

59.649

98.559

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.714

96.83

0.588
  recA Vibrio cholerae strain A1552

60.714

96.83

0.588
  recA Glaesserella parasuis strain SC1401

60.061

94.524

0.568
  recA Streptococcus pneumoniae Rx1

55.556

100

0.562
  recA Streptococcus pneumoniae D39

55.556

100

0.562
  recA Streptococcus pneumoniae R6

55.556

100

0.562
  recA Streptococcus pneumoniae TIGR4

55.556

100

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

54.342

100

0.559
  recA Streptococcus pyogenes NZ131

57.273

95.101

0.545
  recA Lactococcus lactis subsp. cremoris KW2

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.143

94.813

0.542
  recA Streptococcus mitis SK321

56.839

94.813

0.539
  recA Streptococcus mutans UA159

55.689

96.254

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

93.948

0.524