Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PP263_RS08810 Genome accession   NZ_CP116899
Coordinates   2067241..2068278 (-) Length   345 a.a.
NCBI ID   WP_183460349.1    Uniprot ID   A0A7W4Z9C8
Organism   Microbulbifer sp. TB1203     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2062241..2073278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP263_RS08780 - 2062529..2062882 (-) 354 WP_308368021.1 histidine triad nucleotide-binding protein -
  PP263_RS08785 - 2062888..2063079 (-) 192 WP_183460339.1 Trm112 family protein -
  PP263_RS08790 - 2063154..2063993 (-) 840 WP_308368022.1 alpha/beta hydrolase -
  PP263_RS08795 - 2064041..2065057 (-) 1017 WP_308368023.1 class I fructose-bisphosphate aldolase -
  PP263_RS08800 glpK 2065127..2066608 (-) 1482 WP_308368024.1 glycerol kinase GlpK -
  PP263_RS08805 - 2066747..2067241 (-) 495 WP_308368025.1 regulatory protein RecX -
  PP263_RS08810 recA 2067241..2068278 (-) 1038 WP_183460349.1 recombinase RecA Machinery gene
  PP263_RS08815 - 2068438..2068953 (-) 516 WP_308368026.1 CinA family protein -
  PP263_RS08820 - 2068971..2071097 (-) 2127 WP_308368027.1 UvrD-helicase domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37141.56 Da        Isoelectric Point: 5.1725

>NTDB_id=780984 PP263_RS08810 WP_183460349.1 2067241..2068278(-) (recA) [Microbulbifer sp. TB1203]
MDSNKDKALQAALSQIERQFGKGTVMRMGDKERVQIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGQGINLLGEIIDYGVKLGLIDKAGAWYSYKGDKIGQGKANAVKFLKENQEIRDEIEG
QLRAQLLGAPVPAKPEETAAEITED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=780984 PP263_RS08810 WP_183460349.1 2067241..2068278(-) (recA) [Microbulbifer sp. TB1203]
ATGGATTCCAACAAAGACAAGGCACTGCAGGCGGCGCTGTCTCAGATCGAGCGCCAGTTCGGCAAGGGTACGGTGATGCG
CATGGGGGACAAGGAGCGCGTCCAGATTCCGGCAATATCCACCGGCTCCCTGGGCCTGGATGTGGCCCTGGGCATCGGCG
GTCTGCCCCGCGGCCGAATCGTGGAGATCTACGGCCCGGAATCCTCCGGTAAAACCACCCTGACCCTGCAGGTCATTGCC
GAAGCCCAGCGCAAGGGCGGCACCTGTGCCTTCGTCGATGCCGAGCACGCGCTGGACCCCATCTATGCGGAAAAGCTCGG
CGTGAATGTGGACGAGTTGATCGTGTCCCAGCCGGATACCGGCGAACAGGCGCTGGAAGTTGCCGATATGCTGGTGCGCT
CCGGCGCGGTGGATGTACTGGTGGTGGACTCGGTGGCGGCGCTGACCCCGCGTGCGGAAATCGAGGGCGAGATGGGCGAT
TCCCACGTGGGCCTGCAGGCGCGACTGATGTCCCAGGCGCTGCGCAAGCTCACCGGCAATATCAAGAACACCAATACCCT
GTGCGTTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACCACCGGCGGCAACGCGC
TCAAGTTCTACTCCTCCGTGCGCCTGGATATCCGCCGCATCGGCTCGGTGAAAGAGGGCGACGAAGTGGTGGGCAACGAG
ACCCGGGTGAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGACCGAGTTCCAGATCATGTACGGTCAGGGCAT
CAACCTGCTGGGCGAGATCATCGACTACGGTGTCAAGCTGGGCCTGATCGACAAGGCCGGCGCCTGGTACAGCTATAAGG
GCGACAAGATCGGCCAGGGCAAGGCCAACGCGGTCAAGTTTCTGAAGGAGAACCAGGAAATCCGCGATGAGATCGAAGGC
CAGCTGCGCGCGCAGTTGCTGGGTGCTCCGGTGCCGGCGAAGCCGGAGGAAACCGCAGCGGAAATCACGGAAGACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4Z9C8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.326

99.71

0.771
  recA Vibrio cholerae strain A1552

74.312

94.783

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.783

0.704
  recA Acinetobacter baylyi ADP1

74.006

94.783

0.701
  recA Acinetobacter baumannii D1279779

74.006

94.783

0.701
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae strain FA1090

73.231

94.203

0.69
  recA Glaesserella parasuis strain SC1401

71.779

94.493

0.678
  recA Ralstonia pseudosolanacearum GMI1000

70.606

95.652

0.675
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.025

92.464

0.629
  recA Helicobacter pylori strain NCTC11637

61.808

99.42

0.614
  recA Helicobacter pylori 26695

61.696

99.13

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

93.043

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.942

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

62.195

95.072

0.591
  recA Streptococcus pneumoniae D39

60.671

95.072

0.577
  recA Streptococcus mitis NCTC 12261

60.671

95.072

0.577
  recA Streptococcus pneumoniae Rx1

60.671

95.072

0.577
  recA Streptococcus pneumoniae R6

60.671

95.072

0.577
  recA Streptococcus pneumoniae TIGR4

60.671

95.072

0.577
  recA Streptococcus mutans UA159

61.231

94.203

0.577
  recA Streptococcus mitis SK321

60.061

95.072

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

94.203

0.565
  recA Streptococcus pyogenes NZ131

59.259

93.913

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.975

94.493

0.548