Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OB895_RS04435 Genome accession   NZ_CP116871
Coordinates   879492..880535 (-) Length   347 a.a.
NCBI ID   WP_311879268.1    Uniprot ID   -
Organism   Microbacterium forte strain A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874492..885535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB895_RS04410 - 874989..875462 (-) 474 WP_311879263.1 GNAT family acetyltransferase -
  OB895_RS04415 - 875455..875982 (-) 528 WP_042541766.1 dihydrofolate reductase family protein -
  OB895_RS04420 miaA 876042..876980 (-) 939 WP_042541767.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  OB895_RS04425 miaB 876995..878542 (-) 1548 WP_311879266.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  OB895_RS04430 - 878613..879452 (-) 840 WP_311879267.1 regulatory protein RecX -
  OB895_RS04435 recA 879492..880535 (-) 1044 WP_311879268.1 recombinase RecA Machinery gene
  OB895_RS04440 - 880803..881027 (-) 225 WP_042541771.1 DUF3046 domain-containing protein -
  OB895_RS04445 - 881052..881360 (-) 309 WP_042541772.1 helix-turn-helix domain-containing protein -
  OB895_RS04450 - 881502..881990 (-) 489 WP_311879269.1 CinA family protein -
  OB895_RS04455 pgsA 881987..882562 (-) 576 WP_056376621.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OB895_RS04460 - 882562..885300 (-) 2739 WP_079112685.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37006.33 Da        Isoelectric Point: 5.5113

>NTDB_id=780758 OB895_RS04435 WP_311879268.1 879492..880535(-) (recA) [Microbacterium forte strain A]
MPSPADREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGSWYTYDGDQLGQGKENARTFLLKNPDVALAI
EMQIKQKLGIGGATEAPADELAERRPA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=780758 OB895_RS04435 WP_311879268.1 879492..880535(-) (recA) [Microbacterium forte strain A]
ATGCCATCACCCGCTGACCGCGAGAAGTCCCTCGAGACTGCACTCGCCCAGATCGACCGTCAGTTCGGAAAGGGCTCGGT
CATGCGACTGGGCAGCGACGAGCGCGCACCCGTCGCCGTCATTCCGACCGGTTCGATCGCTCTCGATGTCGCCCTCGGCG
TCGGAGGGCTCCCGCGTGGACGAATCGTCGAGATCTACGGCCCCGAGTCCTCGGGTAAGACGACGCTCACGCTGCACGCG
ATTGCAAACGCCCAGCGTGCCGGCGGGATCGCCGCCTTCATCGATGCCGAGCATGCGCTCGACCCCGACTACGCCGCGAA
GCTCGGTGTCGACATCGACGCTCTTCTCGTCTCGCAGCCCGATACGGGTGAGCAGGCGCTCGAGATCGCGGACATGCTCG
TCCGCTCCGGCGCCATCGATCTGATCGTCATCGACTCCGTCGCGGCTCTCGTGCCTCGGGCCGAGATCGAGGGCGAGATG
GGTGACTCCCACGTGGGTCTGCAGGCTCGACTGATGTCGCAGGCACTGCGAAAGCTCACGGGTGGACTCAACCAGACGAA
CACCACGATGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTCTTCTTCGGATCGCCCGAGACCACCGCGGGTGGAA
AGGCGCTGAAGTTCTACGCGTCGGTTCGCATGGACATCCGCCGCATCGAGACGCTGAAGGACGGCACCGATGCAGTCGGA
AACCGCACCAGGGTCAAGGTGGTGAAGAACAAGATGGCACCGCCGTTCAAGCAGGCGGAGTTCGACATCCTGTATGGCGT
CGGCATCTCGCGCGAGGGCAGCCTGATCGACTTCGGTGTCGAGCACGCCATCGTGAAGAAGTCCGGATCGTGGTACACCT
ACGACGGCGACCAGCTGGGCCAGGGCAAGGAGAACGCGCGGACGTTCCTCCTCAAGAACCCCGATGTCGCGCTTGCGATC
GAGATGCAGATCAAGCAAAAGCTCGGCATCGGAGGAGCCACCGAGGCACCTGCTGACGAGCTCGCCGAGCGTCGTCCGGC
ATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

63.848

98.847

0.631
  recA Neisseria gonorrhoeae MS11

63.848

98.847

0.631
  recA Neisseria gonorrhoeae MS11

63.848

98.847

0.631
  recA Acinetobacter baylyi ADP1

63.93

98.271

0.628
  recA Acinetobacter baumannii D1279779

64.497

97.406

0.628
  recA Pseudomonas stutzeri DSM 10701

67.492

93.084

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

93.948

0.62
  recA Ralstonia pseudosolanacearum GMI1000

68.69

90.202

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

93.084

0.614
  recA Vibrio cholerae strain A1552

65.944

93.084

0.614
  recA Streptococcus mitis SK321

60.694

99.712

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.652

97.695

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

61.905

96.83

0.599
  recA Glaesserella parasuis strain SC1401

62.462

93.66

0.585
  recA Helicobacter pylori strain NCTC11637

61.212

95.101

0.582
  recA Streptococcus mitis NCTC 12261

61.212

95.101

0.582
  recA Helicobacter pylori 26695

61.212

95.101

0.582
  recA Streptococcus pneumoniae TIGR4

60.909

95.101

0.579
  recA Streptococcus pneumoniae Rx1

60.909

95.101

0.579
  recA Streptococcus pneumoniae D39

60.909

95.101

0.579
  recA Streptococcus pneumoniae R6

60.909

95.101

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

94.813

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.303

95.101

0.573
  recA Streptococcus mutans UA159

60.182

94.813

0.571
  recA Streptococcus pyogenes NZ131

60.061

94.524

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

93.372

0.553