Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PN942_RS00950 | Genome accession | NZ_CP116807 |
| Coordinates | 206900..207970 (+) | Length | 356 a.a. |
| NCBI ID | WP_016998657.1 | Uniprot ID | - |
| Organism | Mammaliicoccus lentus strain PVZ.22 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 205581..243135 | 206900..207970 | within | 0 |
Gene organization within MGE regions
Location: 205581..243135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PN942_RS00945 (PN942_00945) | - | 205581..206738 (+) | 1158 | WP_282461050.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| PN942_RS00950 (PN942_00950) | recA | 206900..207970 (+) | 1071 | WP_016998657.1 | recombinase RecA | Machinery gene |
| PN942_RS00955 (PN942_00955) | rny | 208174..209733 (+) | 1560 | WP_016998658.1 | ribonuclease Y | - |
| PN942_RS00960 (PN942_00960) | - | 209827..211053 (-) | 1227 | WP_103269431.1 | site-specific integrase | - |
| PN942_RS00965 (PN942_00965) | - | 211066..211527 (-) | 462 | WP_282461051.1 | ImmA/IrrE family metallo-endopeptidase | - |
| PN942_RS00970 (PN942_00970) | - | 211546..211917 (-) | 372 | WP_016998661.1 | hypothetical protein | - |
| PN942_RS00975 (PN942_00975) | - | 212012..213154 (-) | 1143 | WP_103269428.1 | hypothetical protein | - |
| PN942_RS00980 (PN942_00980) | - | 213167..213787 (-) | 621 | WP_103269427.1 | hypothetical protein | - |
| PN942_RS00985 (PN942_00985) | - | 213929..214309 (-) | 381 | WP_103269426.1 | helix-turn-helix transcriptional regulator | - |
| PN942_RS00990 (PN942_00990) | - | 214474..214665 (+) | 192 | WP_103269425.1 | helix-turn-helix transcriptional regulator | - |
| PN942_RS00995 (PN942_00995) | - | 214784..214975 (+) | 192 | WP_103269424.1 | hypothetical protein | - |
| PN942_RS01000 (PN942_01000) | - | 214972..215097 (-) | 126 | WP_282461052.1 | hypothetical protein | - |
| PN942_RS01005 (PN942_01005) | - | 215209..215370 (+) | 162 | WP_174700878.1 | hypothetical protein | - |
| PN942_RS01010 (PN942_01010) | - | 215370..215567 (+) | 198 | WP_282461053.1 | XkdX family protein | - |
| PN942_RS01015 (PN942_01015) | - | 215648..215959 (+) | 312 | WP_182093889.1 | hypothetical protein | - |
| PN942_RS01020 (PN942_01020) | - | 215970..216407 (+) | 438 | WP_103269421.1 | hypothetical protein | - |
| PN942_RS01025 (PN942_01025) | - | 216412..217059 (+) | 648 | WP_103269420.1 | BppU family phage baseplate upper protein | - |
| PN942_RS01030 (PN942_01030) | - | 217120..217779 (+) | 660 | WP_103269419.1 | hypothetical protein | - |
| PN942_RS01035 (PN942_01035) | - | 217779..217997 (+) | 219 | WP_103269418.1 | hypothetical protein | - |
| PN942_RS01040 (PN942_01040) | - | 218049..218357 (+) | 309 | WP_103269417.1 | phage holin | - |
| PN942_RS01045 (PN942_01045) | - | 218392..219768 (+) | 1377 | WP_182093890.1 | SH3 domain-containing protein | - |
| PN942_RS01050 (PN942_01050) | - | 219875..220657 (+) | 783 | WP_103269415.1 | hypothetical protein | - |
| PN942_RS01055 (PN942_01055) | - | 220778..220999 (+) | 222 | WP_103269414.1 | hypothetical protein | - |
| PN942_RS01060 (PN942_01060) | - | 220996..221661 (+) | 666 | WP_103269413.1 | hypothetical protein | - |
| PN942_RS01065 (PN942_01065) | - | 221667..221798 (+) | 132 | WP_258027593.1 | hypothetical protein | - |
| PN942_RS01070 (PN942_01070) | - | 221955..222764 (+) | 810 | WP_182093891.1 | VOC family protein | - |
| PN942_RS01075 (PN942_01075) | - | 223151..223417 (+) | 267 | WP_103269411.1 | hypothetical protein | - |
| PN942_RS01080 (PN942_01080) | - | 223398..223880 (+) | 483 | WP_103269410.1 | hypothetical protein | - |
| PN942_RS14035 | - | 225336..225692 (-) | 357 | Protein_217 | YolD-like family protein | - |
| PN942_RS01095 (PN942_01095) | - | 225984..226946 (-) | 963 | WP_016998742.1 | threonine/serine dehydratase | - |
| PN942_RS01105 (PN942_01105) | - | 227100..227978 (-) | 879 | WP_282461054.1 | ornithine cyclodeaminase family protein | - |
| PN942_RS01110 (PN942_01110) | - | 228391..229188 (+) | 798 | WP_016998744.1 | glycerophosphodiester phosphodiesterase family protein | - |
| PN942_RS01115 (PN942_01115) | - | 229930..230169 (-) | 240 | WP_282461055.1 | hypothetical protein | - |
| PN942_RS01120 (PN942_01120) | - | 230415..230729 (+) | 315 | WP_103269407.1 | hypothetical protein | - |
| PN942_RS01125 (PN942_01125) | - | 230854..231360 (-) | 507 | WP_017000480.1 | ATP-binding protein | - |
| PN942_RS01130 (PN942_01130) | - | 231528..232133 (+) | 606 | WP_017000479.1 | FMN-binding negative transcriptional regulator | - |
| PN942_RS01135 (PN942_01135) | - | 232437..233084 (-) | 648 | WP_214269847.1 | staphylokinase domain-containing protein | - |
| PN942_RS01140 (PN942_01140) | - | 233588..235093 (+) | 1506 | WP_017000477.1 | glycosyltransferase | - |
| PN942_RS01145 (PN942_01145) | - | 235219..235437 (-) | 219 | WP_017000476.1 | hypothetical protein | - |
| PN942_RS01150 (PN942_01150) | - | 235590..236381 (+) | 792 | WP_026023702.1 | TIGR00282 family metallophosphoesterase | - |
| PN942_RS01155 (PN942_01155) | - | 236488..238245 (+) | 1758 | WP_064204833.1 | 2-oxoacid:acceptor oxidoreductase subunit alpha | - |
| PN942_RS01160 (PN942_01160) | - | 238246..239112 (+) | 867 | WP_017000473.1 | 2-oxoacid:ferredoxin oxidoreductase subunit beta | - |
| PN942_RS01165 (PN942_01165) | - | 239184..239474 (+) | 291 | WP_017000472.1 | MTH1187 family thiamine-binding protein | - |
| PN942_RS01170 (PN942_01170) | - | 239570..241291 (+) | 1722 | WP_064210911.1 | ABC transporter ATP-binding protein | - |
| PN942_RS01175 (PN942_01175) | - | 241291..243135 (+) | 1845 | WP_282461176.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 38862.11 Da Isoelectric Point: 5.3969
>NTDB_id=780347 PN942_RS00950 WP_016998657.1 206900..207970(+) (recA) [Mammaliicoccus lentus strain PVZ.22]
MNEQRQKALDTVIKNMEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EAQRQGGVAAFIDAEHALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNR
TKIKVVKNKVAPPFRVAEVDIMYGEGISREGELIDLAVEYEIVDKSGAWYSYNGERMGQGKENVKTYLKENPAIIEEIDS
ILRNELGFNGKPKEEAKKDKKDKKEENPEQESLLDQ
MNEQRQKALDTVIKNMEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EAQRQGGVAAFIDAEHALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNR
TKIKVVKNKVAPPFRVAEVDIMYGEGISREGELIDLAVEYEIVDKSGAWYSYNGERMGQGKENVKTYLKENPAIIEEIDS
ILRNELGFNGKPKEEAKKDKKDKKEENPEQESLLDQ
Nucleotide
Download Length: 1071 bp
>NTDB_id=780347 PN942_RS00950 WP_016998657.1 206900..207970(+) (recA) [Mammaliicoccus lentus strain PVZ.22]
GTGAACGAACAACGTCAGAAAGCACTCGATACAGTAATTAAGAATATGGAAAAATCCTTTGGTAAAGGGGCAGTTATGAA
ACTTGGGGATAACACAAGTAGAGAAGTTTCAGCTGTGTCCAGTGGATCTATTACATTAGATAAAGCTTTAGGAGTAGGTG
GATATCCTAAAGGACGTATTATTGAAATATATGGACCAGAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCTATTGCA
GAAGCACAACGTCAAGGAGGCGTAGCTGCATTTATCGATGCTGAGCATGCTTTAGACCCAGTTTATGCTAAGAATTTAGG
CGTAGATATAGATAACCTTTATTTATCACAACCTGACCACGGGGAACAAGGACTTGAGATTGCTGAAGCATTCGTAAGAA
GTGGTGCTGTTGATATTATTATCGTTGACTCTGTAGCTGCTCTTACACCTAAGGCTGAAATTGAAGGCGAAATGGGCGAT
ACACACGTTGGTTTACAAGCTCGTCTAATGAGCCAAGCTTTACGTAAATTATCAGCTGCAATATCTAAATCAAATACAAC
TGCAATATTTATCAACCAAATTCGTGAAAAAGTAGGCGTTATGTTCGGTAACCCTGAAGTTACACCTGGTGGTCGTGCAC
TTAAATTCTATAGTTCTGTTCGTTTAGAAGTGCGTAGAGCCGAACAATTGAAACAAGGTCAAGAAGTTGTAGGTAACCGT
ACTAAGATTAAAGTTGTTAAGAACAAAGTGGCACCACCATTTAGAGTAGCAGAAGTTGATATTATGTACGGTGAAGGTAT
TTCACGTGAAGGCGAATTAATCGATTTAGCTGTTGAATATGAAATCGTCGATAAATCAGGTGCTTGGTATTCTTATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAATGTTAAAACATACTTGAAAGAAAACCCAGCTATCATTGAAGAAATTGATTCT
ATTCTTAGAAATGAATTAGGTTTTAATGGTAAACCTAAAGAAGAAGCTAAGAAAGATAAGAAAGATAAAAAAGAAGAAAA
TCCTGAGCAAGAATCATTGCTAGATCAATAA
GTGAACGAACAACGTCAGAAAGCACTCGATACAGTAATTAAGAATATGGAAAAATCCTTTGGTAAAGGGGCAGTTATGAA
ACTTGGGGATAACACAAGTAGAGAAGTTTCAGCTGTGTCCAGTGGATCTATTACATTAGATAAAGCTTTAGGAGTAGGTG
GATATCCTAAAGGACGTATTATTGAAATATATGGACCAGAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCTATTGCA
GAAGCACAACGTCAAGGAGGCGTAGCTGCATTTATCGATGCTGAGCATGCTTTAGACCCAGTTTATGCTAAGAATTTAGG
CGTAGATATAGATAACCTTTATTTATCACAACCTGACCACGGGGAACAAGGACTTGAGATTGCTGAAGCATTCGTAAGAA
GTGGTGCTGTTGATATTATTATCGTTGACTCTGTAGCTGCTCTTACACCTAAGGCTGAAATTGAAGGCGAAATGGGCGAT
ACACACGTTGGTTTACAAGCTCGTCTAATGAGCCAAGCTTTACGTAAATTATCAGCTGCAATATCTAAATCAAATACAAC
TGCAATATTTATCAACCAAATTCGTGAAAAAGTAGGCGTTATGTTCGGTAACCCTGAAGTTACACCTGGTGGTCGTGCAC
TTAAATTCTATAGTTCTGTTCGTTTAGAAGTGCGTAGAGCCGAACAATTGAAACAAGGTCAAGAAGTTGTAGGTAACCGT
ACTAAGATTAAAGTTGTTAAGAACAAAGTGGCACCACCATTTAGAGTAGCAGAAGTTGATATTATGTACGGTGAAGGTAT
TTCACGTGAAGGCGAATTAATCGATTTAGCTGTTGAATATGAAATCGTCGATAAATCAGGTGCTTGGTATTCTTATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAATGTTAAAACATACTTGAAAGAAAACCCAGCTATCATTGAAGAAATTGATTCT
ATTCTTAGAAATGAATTAGGTTTTAATGGTAAACCTAAAGAAGAAGCTAAGAAAGATAAGAAAGATAAAAAAGAAGAAAA
TCCTGAGCAAGAATCATTGCTAGATCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.