Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   pBML2531_RS10825 Genome accession   NZ_AP022372
Coordinates   2366493..2367560 (+) Length   355 a.a.
NCBI ID   WP_094962029.1    Uniprot ID   -
Organism   Providencia rettgeri strain BML2526     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2361493..2372560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  pBML2531_RS10805 (BML2526_21030) aroL 2361881..2362378 (+) 498 WP_004264804.1 shikimate kinase AroL -
  pBML2531_RS10810 (BML2526_21040) aas 2362519..2364666 (+) 2148 WP_164455146.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  pBML2531_RS10815 (BML2526_21050) lplT 2364668..2365870 (+) 1203 WP_036958917.1 lysophospholipid transporter LplT -
  pBML2531_RS10820 (BML2526_21060) pncC 2365885..2366388 (+) 504 WP_004264808.1 nicotinamide-nucleotide amidase -
  pBML2531_RS10825 (BML2526_21070) recA 2366493..2367560 (+) 1068 WP_094962029.1 recombinase RecA Machinery gene
  pBML2531_RS10830 (BML2526_21080) alaS 2367887..2370514 (+) 2628 WP_094962028.1 alanine--tRNA ligase -
  pBML2531_RS10835 (BML2526_21090) csrA 2370742..2370927 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 38184.50 Da        Isoelectric Point: 4.8129

>NTDB_id=77932 pBML2531_RS10825 WP_094962029.1 2366493..2367560(+) (recA) [Providencia rettgeri strain BML2526]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANSTNYLKEHPEVAQEI
DTKLREMLLNHTGEFSSAATDFISDADEEETPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=77932 pBML2531_RS10825 WP_094962029.1 2366493..2367560(+) (recA) [Providencia rettgeri strain BML2526]
ATGGCTATTGATGAAAACAAACAAAAAGCACTTGCAGCAGCATTAGGCCAAATTGAAAAGCAATTTGGTAAAGGTTCCAT
TATGCGTCTTGGTGAAGACCGCTCTATGGATGTTGAAACTATCTCAACAGGCTCCTTATCCCTTGATGTTGCATTGGGTG
CTGGTGGCTTGCCACTAGGTCGTATTGTTGAAATCTACGGCCCTGAATCTTCAGGTAAAACAACACTAACTCTGCAAGTT
ATTGCTGCAGCGCAACGTAGTGGTAAAACATGTGCTTTCATCGATGCTGAACACGCTTTAGACCCTATCTATGCTAAAAA
ATTAGGCGTTGATATCGATAACTTACTATGTTCTCAACCGGACACCGGTGAGCAAGCGCTAGAAATTTGTGATGCATTAA
CTCGCTCAGGTGCGGTTGATGTGATCATCGTTGACTCCGTTGCTGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACATATGGGCCTAGCTGCTCGTATGATGAGCCAAGCAATGCGTAAGTTAGCAGGTAACTTAAAAACATCTAA
TACCTTACTGATCTTTATCAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAACCCAGAAACAACAACAGGTGGTA
ATGCATTAAAATTCTACGCATCTGTTCGTTTAGACATCCGCCGTATTGGTGCTGTTAAAAATGGCGAAGAAATCGTCGGT
AGTGAAACTCGCGTTAAAGTGGTAAAAAACAAAGTTGCAGCACCGTTCAAACAAGCTGAATTCCAAATTTTGTATGGTGA
AGGTATTAATACCTTCGGCGAGCTAATTGACTTAGGTGTAAAACATAAGTTAATTGAAAAAGCAGGGGCTTGGTATAGTT
ATAACGGCGATAAAATTGGCCAAGGTAAAGCTAACTCAACAAATTATTTAAAAGAGCACCCTGAAGTCGCTCAAGAAATT
GATACCAAACTGCGTGAAATGTTATTGAATCATACTGGTGAATTTAGTAGTGCAGCAACAGACTTTATCAGTGATGCTGA
TGAAGAAGAAACACCAGAAGAATTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.447

100

0.811

  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.447

100

0.811

  recA Pseudomonas stutzeri DSM 10701

71.965

97.465

0.701

  recA Acinetobacter baumannii D1279779

69.801

98.873

0.69

  recA Acinetobacter baylyi ADP1

70.115

98.028

0.687

  recA Glaesserella parasuis strain SC1401

68.376

98.873

0.676

  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651

  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651

  recA Neisseria gonorrhoeae strain FA1090

65.439

99.437

0.651

  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.606

0.62

  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583

  recA Latilactobacillus sakei subsp. sakei 23K

58.807

99.155

0.583

  recA Helicobacter pylori 26695

62.997

92.113

0.58

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

89.859

0.572

  recA Streptococcus pneumoniae Rx1

62.539

90.986

0.569

  recA Streptococcus pneumoniae D39

62.539

90.986

0.569

  recA Streptococcus pneumoniae R6

62.539

90.986

0.569

  recA Streptococcus pneumoniae TIGR4

62.539

90.986

0.569

  recA Streptococcus mitis SK321

62.229

90.986

0.566

  recA Streptococcus mitis NCTC 12261

61.92

90.986

0.563

  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.986

0.563

  recA Streptococcus pyogenes NZ131

61.231

91.549

0.561

  recA Streptococcus mutans UA159

61.231

91.549

0.561

  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.521

0.555

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.423

0.546


Multiple sequence alignment