Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PMC74_RS05885 Genome accession   NZ_CP116669
Coordinates   1295508..1296575 (+) Length   355 a.a.
NCBI ID   WP_033700849.1    Uniprot ID   -
Organism   Pseudomonas capeferrum strain TDA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1290508..1301575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMC74_RS05865 (PMC74_05865) fdxA 1290580..1290903 (-) 324 WP_027595821.1 ferredoxin FdxA -
  PMC74_RS05870 (PMC74_05870) mutS 1291044..1293617 (-) 2574 WP_033700852.1 DNA mismatch repair protein MutS -
  PMC74_RS05875 (PMC74_05875) - 1293800..1294867 (+) 1068 WP_033700851.1 hypothetical protein -
  PMC74_RS05880 (PMC74_05880) - 1294922..1295404 (+) 483 WP_033700850.1 CinA family protein -
  PMC74_RS05885 (PMC74_05885) recA 1295508..1296575 (+) 1068 WP_033700849.1 recombinase RecA Machinery gene
  PMC74_RS05890 (PMC74_05890) recX 1296598..1297068 (+) 471 WP_033700848.1 recombination regulator RecX -
  PMC74_RS05895 (PMC74_05895) - 1297376..1298494 (-) 1119 WP_033700846.1 LOG family protein -
  PMC74_RS05900 (PMC74_05900) - 1298799..1299011 (+) 213 WP_033700845.1 hypothetical protein -
  PMC74_RS05905 (PMC74_05905) - 1299021..1299440 (-) 420 WP_033700844.1 quorum-sensing-regulated virulence factor family protein -
  PMC74_RS05910 (PMC74_05910) - 1299658..1300368 (+) 711 WP_047581651.1 tRNA-uridine aminocarboxypropyltransferase -
  PMC74_RS05915 (PMC74_05915) erdR 1300592..1301242 (+) 651 WP_156311319.1 response regulator transcription factor ErdR -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37540.97 Da        Isoelectric Point: 5.8866

>NTDB_id=778969 PMC74_RS05885 WP_033700849.1 1295508..1296575(+) (recA) [Pseudomonas capeferrum strain TDA1]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERTGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEAGKAAAVEAKADDVADAEAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=778969 PMC74_RS05885 WP_033700849.1 1295508..1296575(+) (recA) [Pseudomonas capeferrum strain TDA1]
ATGGACGACAACAAGAAACGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCACTGGCATCCCGGCCATCTCCACCGGTTCCCTGGGCCTGGACATCGCCCTCGGTATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAAATCTACGGCCCGGAGTCCTCGGGTAAAACCACCCTGACCCTGTCGGTCATTGCC
GAAGCCCAGAAGAACGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCCCTCGACCCGGAATACGCCGGCAAGCTGGG
TGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCTGCTCTGGTCCCCAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGTCTGCAGGCCCGTCTGATGTCGCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTGGGTGTTTCTCAGGGGCTGGTGGAGAAATCCGGTGCCTGGTACGCCTACCAGG
GCAACAAGATCGGCCAAGGTAAAGCCAACGCCGCCAAGTACCTGGCTGAGAACCCGGCCATTGGCGCCGAGATCGAGAAG
CAGATCCGCGAGAAGCTGCTCAAGGCTGGTGCTGCCGCCGAAGCAGGCAAGGCTGCCGCAGTCGAGGCCAAGGCCGACGA
CGTGGCTGATGCCGAAGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.636

99.155

0.879
  recA Acinetobacter baylyi ADP1

76.453

92.113

0.704
  recA Acinetobacter baumannii D1279779

74.622

93.239

0.696
  recA Vibrio cholerae strain A1552

74.312

92.113

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

92.113

0.685
  recA Glaesserella parasuis strain SC1401

68.571

98.592

0.676
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.113

0.594
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.423

0.566
  recA Streptococcus pyogenes NZ131

55.271

98.873

0.546
  recA Streptococcus mitis SK321

56.932

95.493

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

90.423

0.538
  recA Streptococcus pneumoniae TIGR4

58.589

91.831

0.538
  recA Streptococcus pneumoniae Rx1

58.589

91.831

0.538
  recA Streptococcus pneumoniae D39

58.589

91.831

0.538
  recA Streptococcus pneumoniae R6

58.589

91.831

0.538
  recA Streptococcus mutans UA159

58.462

91.549

0.535
  recA Streptococcus mitis NCTC 12261

58.204

90.986

0.53
  recA Lactococcus lactis subsp. cremoris KW2

56.966

90.986

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

91.831

0.513