Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PHA78_RS00415 Genome accession   NZ_CP116604
Coordinates   78919..80070 (+) Length   383 a.a.
NCBI ID   WP_024377066.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 73919..85070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS00390 - 75132..75497 (+) 366 WP_024377061.1 helix-turn-helix transcriptional regulator -
  PHA78_RS00395 - 75512..76159 (+) 648 WP_024377062.1 type II CAAX endopeptidase family protein -
  PHA78_RS00400 ruvA 76237..76827 (+) 591 WP_024377699.1 Holliday junction branch migration protein RuvA -
  PHA78_RS00405 - 77080..77649 (+) 570 WP_024377700.1 DNA-3-methyladenine glycosylase I -
  PHA78_RS00410 cinA 77686..78867 (+) 1182 WP_024377701.1 competence/damage-inducible protein A Machinery gene
  PHA78_RS00415 recA 78919..80070 (+) 1152 WP_024377066.1 recombinase RecA Machinery gene
  PHA78_RS00420 spx 80230..80628 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  PHA78_RS00425 - 80735..81001 (+) 267 WP_024377702.1 IreB family regulatory phosphoprotein -
  PHA78_RS00430 ruvX 81001..81420 (+) 420 WP_099780101.1 Holliday junction resolvase RuvX -
  PHA78_RS00435 - 81432..81749 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -
  PHA78_RS00440 - 81943..82521 (+) 579 WP_050572088.1 nucleotidyltransferase family protein -
  PHA78_RS00445 rpsJ 83188..83496 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  PHA78_RS00450 rplC 83710..84336 (+) 627 WP_004195488.1 50S ribosomal protein L3 -
  PHA78_RS00455 rplD 84361..84984 (+) 624 WP_024377706.1 50S ribosomal protein L4 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40942.74 Da        Isoelectric Point: 4.8974

>NTDB_id=778739 PHA78_RS00415 WP_024377066.1 78919..80070(+) (recA) [Streptococcus sp. HN38]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRIHYGLIEGEEAPEVVTEEAPVVAEEIQDVVLDLDGGIELEE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=778739 PHA78_RS00415 WP_024377066.1 78919..80070(+) (recA) [Streptococcus sp. HN38]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAACAAAAAGTTCAAGTCA
TGAGTTCAGGTAGCTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTATGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAAAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCAGAACATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTCTTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGTAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATCGATGGCGATATTGGTGATAGTCATGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGCAAACTCGGAGCATCTATCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCCGAAACAACACCTGGTGGTCGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAATACACAAATCAAAGGAACAGGCGACAAGAAAGACCAAAATGTTGGTAAGGAAACCAAGGTGAAAATCGTGAAGAA
CAAGGTGGCTCCACCGTTTAAAGAGGTTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTGGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATTCGTATTCATTATGGATT
GATTGAAGGTGAGGAAGCACCAGAAGTCGTGACAGAGGAAGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTGTTTTGG
ACTTGGATGGCGGCATCGAATTAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

84.896

100

0.851
  recA Streptococcus pyogenes NZ131

84.334

100

0.843
  recA Streptococcus pneumoniae R6

83.42

100

0.841
  recA Streptococcus pneumoniae Rx1

83.42

100

0.841
  recA Streptococcus pneumoniae D39

83.42

100

0.841
  recA Streptococcus pneumoniae TIGR4

83.42

100

0.841
  recA Streptococcus mitis NCTC 12261

84.031

99.739

0.838
  recA Streptococcus mitis SK321

83.508

99.739

0.833
  recA Lactococcus lactis subsp. cremoris KW2

74.504

92.167

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

85.901

0.582
  recA Acinetobacter baumannii D1279779

59.829

91.645

0.548
  recA Neisseria gonorrhoeae MS11

61.934

86.423

0.535
  recA Neisseria gonorrhoeae MS11

61.934

86.423

0.535
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.423

0.535
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.18

87.206

0.525
  recA Vibrio cholerae strain A1552

61.231

84.856

0.52
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.856

0.52
  recA Acinetobacter baylyi ADP1

61.231

84.856

0.52
  recA Glaesserella parasuis strain SC1401

61.231

84.856

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

84.334

0.514
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.602

89.295

0.514
  recA Pseudomonas stutzeri DSM 10701

59.692

84.856

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.252

82.768

0.499
  recA Helicobacter pylori strain NCTC11637

57.975

85.117

0.493
  recA Helicobacter pylori 26695

57.975

85.117

0.493