Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PML84_RS03270 Genome accession   NZ_CP116587
Coordinates   691366..692496 (+) Length   376 a.a.
NCBI ID   WP_010020556.1    Uniprot ID   -
Organism   Companilactobacillus farciminis strain K68-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 686366..697496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML84_RS03245 (PML84_03245) yfmH 687191..688429 (+) 1239 WP_201307920.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  PML84_RS03250 (PML84_03250) ymfI 688433..689155 (+) 723 WP_010020562.1 elongation factor P 5-aminopentanone reductase -
  PML84_RS03255 (PML84_03255) - 689221..690057 (+) 837 WP_271793913.1 helix-turn-helix domain-containing protein -
  PML84_RS03260 (PML84_03260) pgsA 690130..690714 (+) 585 WP_271793914.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PML84_RS03265 (PML84_03265) - 690738..691277 (+) 540 WP_271793915.1 CinA family protein -
  PML84_RS03270 (PML84_03270) recA 691366..692496 (+) 1131 WP_010020556.1 recombinase RecA Machinery gene
  PML84_RS03275 (PML84_03275) rny 692643..694208 (+) 1566 WP_010020554.1 ribonuclease Y -
  PML84_RS03280 (PML84_03280) - 694329..695414 (+) 1086 WP_029606563.1 glycosyltransferase family 4 protein -
  PML84_RS03285 (PML84_03285) - 695554..696315 (+) 762 WP_271793916.1 helix-turn-helix domain-containing protein -
  PML84_RS03290 (PML84_03290) - 696351..696989 (-) 639 WP_271793917.1 YigZ family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40594.88 Da        Isoelectric Point: 4.9594

>NTDB_id=778647 PML84_RS03270 WP_010020556.1 691366..692496(+) (recA) [Companilactobacillus farciminis strain K68-8]
MAKDERQKALDVALKKIEKDFGKGAIMRMGDDLNTQISTVSSGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGTDVIGN
RTKIKVVKNKVAPPFKIALVDIMYGHGISQTGELVDMAVDKDIIDKSGSWYSYGDERIGQGRENAKTYLANNPDKMEEIK
QKVRAAYGMDGKPEDEETSDDAKDDKSKDSKKDEKSTKKGDEALDLNLDTDKKENK

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=778647 PML84_RS03270 WP_010020556.1 691366..692496(+) (recA) [Companilactobacillus farciminis strain K68-8]
TTGGCTAAAGATGAACGACAAAAGGCTTTGGATGTAGCCTTAAAGAAGATTGAAAAGGATTTTGGTAAGGGTGCCATTAT
GAGAATGGGTGACGATTTAAATACTCAGATCTCAACTGTTTCTAGTGGTTCACTTGCACTTGATAATGCATTGGGTGTCG
GTGGCTTCCCACGTGGAAGAATCGTAGAAATTTATGGACCTGAAAGTTCTGGTAAAACAACCGTTGCTTTACATGCCGTT
GCTGAAGTTCAAAAGCAAGGTGGTACTGCAGCATATATTGATGCTGAAAATGCCATGGACCCCGCTTATGCAACTGCCTT
GGGTGTTAATATTGATGACCTATTGTTATCACAACCCGATACAGGTGAACAAGGATTAGAGATTGCTGATGCTTTGGTAT
CTAGTGGTGCGGTCGATATCGTCGTTGTCGATTCTGTTGCTGCTTTGGTTCCACGTGCTGAAATTGAAGGCGAAATGGGA
GATTCCCATGTTGGTCTTCAAGCTCGATTGATGTCACAAGCTTTGCGTAAATTGTCTGGTTCAATCAACAAGACTAAGAC
AATTGCACTTTTCATTAATCAGATCCGTGAAAAAGTTGGTATTATGTTCGGTAATCCAGAAACTACTCCTGGTGGTCGTG
CCTTGAAGTTTTATTCAACGATTAGACTAGAAGTACGTCGTGCTGAACAGATTAAAGACGGTACAGATGTAATTGGTAAC
CGTACTAAGATCAAAGTTGTTAAGAACAAGGTTGCTCCACCATTCAAGATTGCTTTGGTAGATATTATGTATGGTCATGG
TATTTCTCAAACTGGTGAGTTAGTCGACATGGCTGTTGATAAAGACATTATCGATAAGAGTGGTTCATGGTACTCATACG
GTGATGAACGAATCGGCCAAGGTCGTGAAAATGCCAAGACTTATCTAGCAAATAATCCTGACAAGATGGAAGAAATCAAG
CAAAAGGTCCGTGCAGCTTATGGCATGGATGGCAAGCCAGAGGATGAAGAAACTTCTGACGATGCCAAAGATGATAAGAG
TAAAGATTCAAAAAAAGATGAGAAGTCGACCAAAAAAGGTGACGAAGCTCTAGATTTGAATCTCGACACTGATAAAAAAG
AAAATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.099

94.415

0.785
  recA Streptococcus mutans UA159

68.194

98.67

0.673
  recA Streptococcus mitis NCTC 12261

68.132

96.809

0.66
  recA Streptococcus mitis SK321

68.132

96.809

0.66
  recA Bacillus subtilis subsp. subtilis str. 168

75.767

86.702

0.657
  recA Streptococcus pneumoniae Rx1

67.978

94.681

0.644
  recA Streptococcus pneumoniae D39

67.978

94.681

0.644
  recA Streptococcus pneumoniae R6

67.978

94.681

0.644
  recA Streptococcus pneumoniae TIGR4

67.978

94.681

0.644
  recA Streptococcus pyogenes NZ131

72.34

87.5

0.633
  recA Lactococcus lactis subsp. cremoris KW2

70.517

87.5

0.617
  recA Neisseria gonorrhoeae strain FA1090

63.415

87.234

0.553
  recA Neisseria gonorrhoeae MS11

63.415

87.234

0.553
  recA Neisseria gonorrhoeae MS11

63.415

87.234

0.553
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.841

91.755

0.54
  recA Vibrio cholerae strain A1552

58.841

91.755

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

85.904

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

86.968

0.537
  recA Acinetobacter baumannii D1279779

59.064

90.957

0.537
  recA Ralstonia pseudosolanacearum GMI1000

63.898

83.245

0.532
  recA Acinetobacter baylyi ADP1

61.371

85.372

0.524
  recA Glaesserella parasuis strain SC1401

55.966

93.617

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.271

87.5

0.519
  recA Pseudomonas stutzeri DSM 10701

60.248

85.638

0.516
  recA Helicobacter pylori strain NCTC11637

58.485

87.766

0.513
  recA Helicobacter pylori 26695

58.485

87.766

0.513