Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PML88_RS11630 Genome accession   NZ_CP116517
Coordinates   2404365..2405411 (-) Length   348 a.a.
NCBI ID   WP_002298208.1    Uniprot ID   A0A829FKG1
Organism   Enterococcus faecium strain R39-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2402942..2404237 2404365..2405411 flank 128


Gene organization within MGE regions


Location: 2402942..2405411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML88_RS11625 (PML88_11625) - 2402942..2404237 (-) 1296 WP_002296623.1 ISL3 family transposase -
  PML88_RS11630 (PML88_11630) recA 2404365..2405411 (-) 1047 WP_002298208.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37414.78 Da        Isoelectric Point: 4.8330

>NTDB_id=777824 PML88_RS11630 WP_002298208.1 2404365..2405411(-) (recA) [Enterococcus faecium strain R39-1]
MADDRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVAVPEDEKGQEELPLEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=777824 PML88_RS11630 WP_002298208.1 2404365..2405411(-) (recA) [Enterococcus faecium strain R39-1]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGGCGAAAAAATCGACCAGCAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTATCCCCGTGGACGTATTATCGAAGTATACGGACCTGAAAGTTCAGGTAAAACAACAGTGGCGCTACATGCTATTGCA
GAAGTACAAAAAAATGGCGGAACTGCCGCTTTTATCGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
TGTGAATATCGATGAACTACTTCTTTCACAGCCTGATACAGGAGAACAAGGTCTGGAGATCGCTGATGCTTTAGTATCAA
GTGGAGCTGTAGACATCGTAGTAGTCGATTCAGTTGCCGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGCGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATTAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTGATGTTTGGGAATCCAGAAATCACGCCTGGAGGACGCGCAT
TGAAATTTTACGCAACGATCCGTTTAGAAGTACGCCGTGCAGAACAATTGAAACAAGGAACAGATATTGTTGGTAACCGT
ACAAAGATTAAAGTCGTGAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATGTCATGTATGGCTTAGGTAT
CTCACAAGAAGGAGAACTTCTAGACATGGCAGTAGAAAAAGACATCGTTGATAAAAGTGGTGCTTGGTATTCTTATAAAG
AAGATCGGATTGGCCAAGGACGGGAAAACGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGTATTGGCGAAGAAGTCGCTGTCCCAGAAGATGAAAAAGGACAAGAAGAATTGCCTTTAGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829FKG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.613

99.425

0.782
  recA Bacillus subtilis subsp. subtilis str. 168

79.385

93.391

0.741
  recA Streptococcus pneumoniae R6

69.231

100

0.698
  recA Streptococcus pneumoniae TIGR4

69.231

100

0.698
  recA Streptococcus pneumoniae Rx1

69.231

100

0.698
  recA Streptococcus pneumoniae D39

69.231

100

0.698
  recA Streptococcus mitis SK321

71.131

96.552

0.687
  recA Streptococcus mitis NCTC 12261

70.833

96.552

0.684
  recA Streptococcus mutans UA159

65.556

100

0.678
  recA Streptococcus pyogenes NZ131

69.789

95.115

0.664
  recA Lactococcus lactis subsp. cremoris KW2

67.477

94.54

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.35

98.563

0.595
  recA Neisseria gonorrhoeae strain FA1090

62.614

94.54

0.592
  recA Neisseria gonorrhoeae MS11

62.614

94.54

0.592
  recA Neisseria gonorrhoeae MS11

62.614

94.54

0.592
  recA Helicobacter pylori 26695

57.925

99.713

0.578
  recA Helicobacter pylori strain NCTC11637

57.925

99.713

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.391

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.816

0.572
  recA Acinetobacter baumannii D1279779

61.61

92.816

0.572
  recA Vibrio cholerae strain A1552

61.61

92.816

0.572
  recA Acinetobacter baylyi ADP1

61.3

92.816

0.569
  recA Ralstonia pseudosolanacearum GMI1000

62.939

89.943

0.566
  recA Pseudomonas stutzeri DSM 10701

60.494

93.103

0.563
  recA Glaesserella parasuis strain SC1401

60.748

92.241

0.56