Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O1Q74_RS04900 Genome accession   NZ_CP116477
Coordinates   1027170..1028243 (+) Length   357 a.a.
NCBI ID   WP_271876565.1    Uniprot ID   -
Organism   Pectobacterium sp. A5351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1022170..1033243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q74_RS04875 (O1Q74_04870) - 1022488..1024086 (-) 1599 WP_271876552.1 sensor domain-containing diguanylate cyclase -
  O1Q74_RS04880 (O1Q74_04875) - 1024266..1024940 (-) 675 WP_271876554.1 MarC family NAAT transporter -
  O1Q74_RS04885 (O1Q74_04880) - 1025023..1025511 (-) 489 WP_271876557.1 SRPBCC family protein -
  O1Q74_RS04890 (O1Q74_04885) - 1025999..1026334 (+) 336 WP_271876560.1 hypothetical protein -
  O1Q74_RS04895 (O1Q74_04890) pncC 1026568..1027062 (+) 495 WP_271876563.1 nicotinamide-nucleotide amidase -
  O1Q74_RS04900 (O1Q74_04895) recA 1027170..1028243 (+) 1074 WP_271876565.1 recombinase RecA Machinery gene
  O1Q74_RS04905 (O1Q74_04900) recX 1028289..1028783 (+) 495 WP_271876568.1 recombination regulator RecX -
  O1Q74_RS04910 (O1Q74_04905) alaS 1028922..1031549 (+) 2628 WP_271876570.1 alanine--tRNA ligase -
  O1Q74_RS04915 (O1Q74_04910) csrA 1031872..1032057 (+) 186 WP_005972168.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38219.64 Da        Isoelectric Point: 4.9699

>NTDB_id=777487 O1Q74_RS04900 WP_271876565.1 1027170..1028243(+) (recA) [Pectobacterium sp. A5351]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAVAAEL
DKTLREMLLHKGNELTPATAGNSHDEDAFADEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=777487 O1Q74_RS04900 WP_271876565.1 1027170..1028243(+) (recA) [Pectobacterium sp. A5351]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACTATTTCTACAGGCTCCTTGTCCCTTGATATTGCTCTGGGCG
CCGGTGGTTTGCCGATGGGCCGTATCGTTGAGATTTATGGCCCGGAATCTTCCGGTAAAACCACGCTGACCTTACAGGTC
ATTGCTGCTGCTCAGCGTGAAGGCAAAACGTGTGCGTTCATCGATGCTGAACACGCGTTGGATCCGATTTATGCGAAAAA
GCTTGGCGTAGATATCGATAATCTGCTGTGTTCTCAGCCGGATACCGGCGAACAAGCTCTGGAAATTTGTGATGCGCTAA
CGCGCTCTGGTGCTGTTGACGTTATCATTGTCGACTCTGTTGCGGCTCTGACGCCGAAAGCAGAAATTGAAGGTGAAATC
GGTGACTCCCACATGGGGCTGGCGGCACGTATGATGAGTCAGGCGATGCGTAAACTGGCGGGTAACCTGAAACAAGCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCTGAAACCACGACCGGCGGTA
ACGCTCTGAAGTTTTATGCTTCCGTTCGTCTGGATATTCGCCGTACCGGTGCTATCAAGGAAGGCGAAGAAGTCGTCGGC
AGCGAAACTCGCGTTAAAGTCGTGAAGAATAAAGTTGCGGCACCGTTCAAACAGGCTGAATTCCAGATTCTGTACGGCGA
AGGTATCAACATCCACGGTGAGCTGGTCGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAAATTGGTCAGGGTAAAGCGAATGCCTGTAATTTCCTGAAAGAGAACCCGGCTGTTGCTGCGGAACTG
GATAAGACATTGCGTGAAATGCTGCTGCATAAAGGTAATGAGCTGACGCCTGCCACAGCCGGCAACAGCCATGACGAAGA
TGCATTCGCTGACGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.997

97.199

0.807
  recA Vibrio cholerae strain A1552

82.997

97.199

0.807
  recA Pseudomonas stutzeri DSM 10701

75.841

91.597

0.695
  recA Acinetobacter baylyi ADP1

70.64

96.359

0.681
  recA Glaesserella parasuis strain SC1401

68.555

98.88

0.678
  recA Acinetobacter baumannii D1279779

72.424

92.437

0.669
  recA Neisseria gonorrhoeae MS11

69.018

91.317

0.63
  recA Neisseria gonorrhoeae MS11

69.018

91.317

0.63
  recA Neisseria gonorrhoeae strain FA1090

69.018

91.317

0.63
  recA Ralstonia pseudosolanacearum GMI1000

70.096

87.115

0.611
  recA Streptococcus mitis SK321

60.282

99.44

0.599
  recA Streptococcus pneumoniae R6

59.718

99.44

0.594
  recA Streptococcus mitis NCTC 12261

59.718

99.44

0.594
  recA Streptococcus pneumoniae TIGR4

59.718

99.44

0.594
  recA Streptococcus pneumoniae Rx1

59.718

99.44

0.594
  recA Streptococcus pneumoniae D39

59.718

99.44

0.594
  recA Helicobacter pylori strain NCTC11637

62.691

91.597

0.574
  recA Helicobacter pylori 26695

62.006

92.157

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.597

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

93.838

0.563
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Streptococcus pyogenes NZ131

61.846

91.036

0.563
  recA Streptococcus mutans UA159

61.538

91.036

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

89.916

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535