Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PJU76_RS07375 Genome accession   NZ_CP116458
Coordinates   1469018..1470055 (-) Length   345 a.a.
NCBI ID   WP_271778994.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain YL25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1464018..1475055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU76_RS07360 (PJU76_07360) - 1465291..1465839 (+) 549 WP_271778991.1 hypothetical protein -
  PJU76_RS07365 (PJU76_07365) alaS 1465863..1468496 (-) 2634 WP_271778992.1 alanine--tRNA ligase -
  PJU76_RS07370 (PJU76_07370) - 1468565..1469017 (-) 453 WP_271778993.1 regulatory protein RecX -
  PJU76_RS07375 (PJU76_07375) recA 1469018..1470055 (-) 1038 WP_271778994.1 recombinase RecA Machinery gene
  PJU76_RS07380 (PJU76_07380) - 1470259..1471116 (-) 858 WP_271778995.1 CinA family protein -
  PJU76_RS07385 (PJU76_07385) - 1471113..1471598 (-) 486 WP_271778996.1 phosphatidylglycerophosphatase A -
  PJU76_RS07390 (PJU76_07390) thiL 1471588..1472610 (-) 1023 WP_271778997.1 thiamine-phosphate kinase -
  PJU76_RS07395 (PJU76_07395) gluQRS 1472672..1473547 (+) 876 WP_271778998.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  PJU76_RS07400 (PJU76_07400) sfsA 1473574..1474272 (+) 699 WP_271778999.1 DNA/RNA nuclease SfsA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36943.08 Da        Isoelectric Point: 5.9349

>NTDB_id=777473 PJU76_RS07375 WP_271778994.1 1469018..1470055(-) (recA) [Acidithiobacillus ferriphilus strain YL25]
MDEQRSKALSAALSQIDKQFGKGAVMRLGDHNAIKDIEVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAI
ASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGN
DTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELTVNIE
QRIRAAAAGHPLAFAEDAVEPAAVG

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=777473 PJU76_RS07375 WP_271778994.1 1469018..1470055(-) (recA) [Acidithiobacillus ferriphilus strain YL25]
ATGGACGAACAGCGTAGCAAGGCCCTTTCGGCGGCCCTCTCACAGATTGATAAGCAATTTGGTAAAGGCGCCGTCATGCG
TCTCGGTGATCATAATGCCATCAAGGACATTGAGGTCTATTCCACCGGTTCGCTGGGGTTGGATCTTGCTCTAGGTGTCG
GTGGTCTGCCGCGGGGGCGGGTGGTAGAGATTTACGGACCGGAATCTTCCGGTAAAACGACCCTTACCCTGCACGCCATA
GCCAGTTGTCAGGCTGCCGGAGGCACGGCGGCTTTCATTGATGCCGAACATGCTCTGGACCCCGGTTATGCCCATAAGCT
CGGCGTCGATCTGGAAAATCTCCTGATCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCCGATATGCTGGTGC
GCTCCGGGGCTGTCGACCTGATTGTTATCGATTCCGTGGCCGCACTGACCCCCAAGGCGGAAATCGAAGGCGACATGGGT
GACTCCCACGTCGGTCTGCAGGCGCGTCTGATGAGCCAGGCCCTGCGCAAGCTTACCGCCAATATCTCCCGGACCAACAC
CCTGGTTATTTTCATCAACCAGATTCGTATGAAAATCGGGGTGATGTACGGCAGCCCGGAAACCACCACCGGTGGTAACG
CCCTCAAATTCTACGCCTCCGTGCGCCTCGATATCCGCCGCATCGGCGCGATCAAAAAGAGCGACGAAGTGGTAGGCAAC
GATACTCGCGTCAAGGTGGTCAAGAATAAGGTGGCACCGCCTTTCCGCGAAGCCGAATTCGCCATTTACTACGGTGAAGG
CATCTCCCGTCTTTCCGAGTTGGTGGACCTCGGCGTGAAGTTCGACATCGTCGAAAAAAGCGGCGCCTGGTACAGTTATC
AGGGAGAACGAATCGGCCAGGGCAAGGATAACGCCCGCCAGTATCTCAAGGAACATCCGGAGTTGACGGTCAATATCGAG
CAACGGATACGGGCAGCGGCGGCAGGACATCCACTGGCCTTTGCCGAAGACGCGGTAGAGCCCGCAGCGGTCGGGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

74.691

93.913

0.701
  recA Pseudomonas stutzeri DSM 10701

74.154

94.203

0.699
  recA Acinetobacter baumannii D1279779

74.074

93.913

0.696
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae strain FA1090

73.231

94.203

0.69
  recA Ralstonia pseudosolanacearum GMI1000

74.763

91.884

0.687
  recA Glaesserella parasuis strain SC1401

71.125

95.362

0.678
  recA Vibrio cholerae strain A1552

70.988

93.913

0.667
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.988

93.913

0.667
  recA Helicobacter pylori strain NCTC11637

66.172

97.681

0.646
  recA Helicobacter pylori 26695

65.875

97.681

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

95.072

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.462

94.203

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.25

92.754

0.614
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64

94.203

0.603
  recA Streptococcus pyogenes NZ131

62.577

94.493

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.346

93.913

0.586
  recA Streptococcus pneumoniae TIGR4

61.963

94.493

0.586
  recA Streptococcus pneumoniae R6

61.963

94.493

0.586
  recA Streptococcus mutans UA159

61.963

94.493

0.586
  recA Streptococcus pneumoniae Rx1

61.963

94.493

0.586
  recA Streptococcus pneumoniae D39

61.963

94.493

0.586
  recA Streptococcus mitis NCTC 12261

61.846

94.203

0.583
  recA Streptococcus mitis SK321

61.846

94.203

0.583
  recA Lactococcus lactis subsp. cremoris KW2

59.939

94.783

0.568