Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PL263_RS08150 Genome accession   NZ_CP116398
Coordinates   1824953..1826002 (-) Length   349 a.a.
NCBI ID   WP_140912354.1    Uniprot ID   -
Organism   Methylomonas sp. EFPC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819953..1831002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL263_RS08130 (PL263_08125) - 1820063..1820332 (-) 270 WP_278212529.1 hypothetical protein -
  PL263_RS08135 (PL263_08130) - 1820504..1821724 (-) 1221 WP_278212531.1 aspartate kinase -
  PL263_RS08140 (PL263_08135) alaS 1821792..1824401 (-) 2610 WP_278212532.1 alanine--tRNA ligase -
  PL263_RS08145 (PL263_08140) - 1824493..1824990 (-) 498 WP_278212533.1 regulatory protein RecX -
  PL263_RS08150 (PL263_08145) recA 1824953..1826002 (-) 1050 WP_140912354.1 recombinase RecA Machinery gene
  PL263_RS08155 (PL263_08150) - 1826073..1827386 (-) 1314 WP_278212535.1 cobyrinate a,c-diamide synthase -
  PL263_RS08160 (PL263_08155) nadA 1827448..1828545 (-) 1098 WP_278212536.1 quinolinate synthase NadA -
  PL263_RS08165 (PL263_08160) - 1828610..1829008 (-) 399 WP_278212537.1 hypothetical protein -
  PL263_RS08170 (PL263_08165) - 1829051..1829620 (-) 570 WP_278212538.1 DUF2780 domain-containing protein -
  PL263_RS08175 (PL263_08170) - 1829914..1830843 (+) 930 WP_278212539.1 ZIP family metal transporter -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37824.19 Da        Isoelectric Point: 5.0540

>NTDB_id=777128 PL263_RS08150 WP_140912354.1 1824953..1826002(-) (recA) [Methylomonas sp. EFPC3]
MDENKKKALGAALMQIEKQFGKGSVMRMGDVAATRDIEVVSTGSLSVDIALGCGGLPRGRIIEIYGPESSGKTTLTLQTI
AQMQKLGGTAAFVDAEHALDPVYAQKIGVNIDDLLVSQPDTGEQALEITDMLVRSGAVDIVVIDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIGAIKKGDEVIGN
ETRVKIVKNKVAPPFKQADFEILYGEGVSFLGELVDLGVEFGFVQKSGSWYSYNNDKIGQGKDNAKQYLREHPEIAAELE
KAIREKAFASRVTTAPAHEDEDPEFNDGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=777128 PL263_RS08150 WP_140912354.1 1824953..1826002(-) (recA) [Methylomonas sp. EFPC3]
ATGGACGAAAACAAGAAAAAGGCTCTCGGCGCCGCGTTGATGCAAATCGAAAAACAATTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACGTCGCCGCGACCCGCGACATCGAAGTGGTGTCCACCGGCTCCTTGTCCGTCGACATCGCGCTGGGTTGCG
GCGGTTTGCCGCGCGGCCGAATCATCGAGATATACGGTCCCGAATCGTCCGGTAAAACCACGTTGACGCTGCAAACCATC
GCCCAGATGCAGAAATTGGGCGGCACCGCGGCCTTCGTTGACGCCGAGCACGCGCTGGACCCGGTGTATGCGCAAAAGAT
CGGCGTCAATATCGACGACCTGCTGGTGTCGCAACCGGATACCGGCGAACAGGCCCTGGAAATCACTGACATGCTGGTCC
GTTCCGGCGCGGTCGACATTGTCGTCATCGACTCGGTGGCGGCGCTGACACCGAAAGCCGAAATCGAAGGCGACATGGGC
GACTCGCACATGGGCTTGCAGGCGCGCTTGATGTCGCAAGCCTTGCGTAAATTGACCGCCAACATCAAACGCTCCAACAC
GCTGGTGATTTTCATCAACCAGTTGCGGATGAAAATCGGCGTGATGTTCGGCAATCCGGAAACCACCACCGGCGGTAACG
CGTTGAAATTCTATGCCTCGGTCAGGATGGACATTCGCCGCATCGGCGCGATCAAGAAAGGCGACGAGGTGATCGGCAAC
GAAACCCGGGTCAAGATCGTCAAGAACAAAGTCGCACCGCCGTTCAAGCAGGCCGACTTCGAAATTCTGTACGGCGAGGG
CGTGTCATTCCTCGGCGAATTGGTCGACTTGGGCGTCGAATTCGGTTTCGTGCAAAAGTCAGGTTCCTGGTACAGCTACA
ACAACGACAAAATCGGCCAAGGCAAGGATAACGCCAAGCAGTATTTGCGCGAGCACCCGGAAATCGCCGCTGAGCTGGAA
AAAGCCATTCGCGAGAAAGCCTTTGCCAGCAGAGTGACGACCGCTCCGGCTCATGAAGACGAAGACCCCGAGTTCAACGA
CGGCGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

71.47

99.427

0.711
  recA Pseudomonas stutzeri DSM 10701

72.222

97.994

0.708
  recA Acinetobacter baumannii D1279779

71.93

97.994

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.462

93.123

0.693
  recA Vibrio cholerae strain A1552

74.462

93.123

0.693
  recA Glaesserella parasuis strain SC1401

67.705

100

0.685
  recA Ralstonia pseudosolanacearum GMI1000

74.516

88.825

0.662
  recA Neisseria gonorrhoeae MS11

70.679

92.837

0.656
  recA Neisseria gonorrhoeae MS11

70.679

92.837

0.656
  recA Neisseria gonorrhoeae strain FA1090

70.679

92.837

0.656
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.061

94.556

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

66.46

92.264

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

93.123

0.599
  recA Streptococcus pneumoniae Rx1

63.497

93.41

0.593
  recA Streptococcus pneumoniae D39

63.497

93.41

0.593
  recA Streptococcus pneumoniae R6

63.497

93.41

0.593
  recA Streptococcus pneumoniae TIGR4

63.497

93.41

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

59.884

98.567

0.59
  recA Streptococcus pyogenes NZ131

62.195

93.983

0.585
  recA Streptococcus mutans UA159

62.27

93.41

0.582
  recA Streptococcus mitis SK321

62.346

92.837

0.579
  recA Streptococcus mitis NCTC 12261

62.346

92.837

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.269

0.576
  recA Helicobacter pylori strain NCTC11637

61.656

93.41

0.576
  recA Helicobacter pylori 26695

61.35

93.41

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.494

92.837

0.562