Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PK654_RS13110 Genome accession   NZ_CP116383
Coordinates   2798741..2799784 (-) Length   347 a.a.
NCBI ID   WP_271696209.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2793741..2804784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS13090 (PK654_13090) csrA 2793893..2794090 (-) 198 WP_271696206.1 carbon storage regulator CsrA -
  PK654_RS13095 (PK654_13095) - 2794176..2795360 (-) 1185 WP_271696207.1 aspartate kinase -
  PK654_RS13100 (PK654_13100) alaS 2795501..2798083 (-) 2583 WP_271696208.1 alanine--tRNA ligase -
  PK654_RS13105 (PK654_13105) recX 2798220..2798681 (-) 462 WP_271698883.1 recombination regulator RecX -
  PK654_RS13110 (PK654_13110) recA 2798741..2799784 (-) 1044 WP_271696209.1 recombinase RecA Machinery gene
  PK654_RS13115 (PK654_13115) modF 2800032..2801495 (+) 1464 WP_271696210.1 molybdate ABC transporter ATP-binding protein ModF -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37478.94 Da        Isoelectric Point: 4.9581

>NTDB_id=776867 PK654_RS13110 WP_271696209.1 2798741..2799784(-) (recA) [Vibrio sp. SCSIO 43137]
MNENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRAGKTCAFVDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYNGDKIGQGKANACKFLRENPQAALEIDT
KLREMLLAPVQLEEDDNSEQDLPQEEL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=776867 PK654_RS13110 WP_271696209.1 2798741..2799784(-) (recA) [Vibrio sp. SCSIO 43137]
ATGAACGAGAATAAACAGAAGGCGCTGGCAGCGGCTCTTGGTCAGATAGAAAAGCAGTTTGGTAAAGGTTCTATCATGCG
TCTTGGTGATAATCGCACCATGGATGTAGAAACTATCTCAACAGGTTCTCTTTCACTGGATATCGCACTGGGTGCCGGTG
GCCTGCCAATGGGACGTATTGTTGAAGTGTACGGTCCGGAGAGCTCAGGTAAAACTACTCTGACACTTGAATTGATTGCA
GCTGCTCAACGTGCGGGTAAAACTTGTGCCTTCGTTGATGCCGAGCACGCGCTGGATCCAATCTATGCTAAAAAACTGGG
TGTTGATATTGATTCACTGCTGGTTTCTCAGCCTGATACCGGTGAGCAAGCTCTGGAAATCTGTGACGCACTAGCACGTT
CAGGCGCTATTGACGTACTGGTTGTTGACTCCGTTGCTGCCCTGACACCAAAAGCTGAAATTGAAGGTGAGATGGGTGAC
AGCCATATGGGTCTGCAGGCTCGTATGCTTTCTCAGGCGATGCGTAAGCTGACAGGTAACCTTAAGCAGTCTAACTGTAT
GTGTATCTTCATTAACCAGATCCGTATGAAGATTGGTGTAATGTTTGGTAACCCTGAAACCACAACTGGTGGTAACGCGC
TTAAGTTCTACGCTTCTGTTCGTCTGGATATTCGTCGTACCGGCTCTATCAAAGAAGGCGATGAGGTTGTTGGTAACGAA
ACTCGTATTAAGGTTGTTAAGAACAAGATTGCAGCGCCATTTAAGCAGGCTGAAACTCAGATTCTTTACGGTAAAGGCTT
TAACCGCGAAGGTGAGCTGATCGATCTGGGTGTTAAGAACAAGCTGGTAGAAAAAGCGGGTGCATGGTACAGCTACAACG
GTGACAAGATTGGTCAGGGTAAAGCGAATGCATGTAAGTTCTTACGTGAGAACCCGCAAGCTGCCCTGGAGATTGATACT
AAACTGCGTGAAATGCTGCTTGCTCCTGTTCAGCTTGAAGAAGATGACAACTCAGAGCAAGACCTGCCACAAGAAGAGCT
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.63

98.847

0.876
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.63

98.847

0.876
  recA Acinetobacter baumannii D1279779

72.334

100

0.723
  recA Pseudomonas stutzeri DSM 10701

75.841

94.236

0.715
  recA Acinetobacter baylyi ADP1

71.676

99.712

0.715
  recA Neisseria gonorrhoeae MS11

67.544

98.559

0.666
  recA Neisseria gonorrhoeae MS11

67.544

98.559

0.666
  recA Neisseria gonorrhoeae strain FA1090

67.544

98.559

0.666
  recA Glaesserella parasuis strain SC1401

69.753

93.372

0.651
  recA Ralstonia pseudosolanacearum GMI1000

71.704

89.625

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.35

98.847

0.597
  recA Streptococcus mutans UA159

57.714

100

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus pneumoniae R6

57.593

100

0.579
  recA Streptococcus pneumoniae TIGR4

57.593

100

0.579
  recA Streptococcus pneumoniae Rx1

57.593

100

0.579
  recA Streptococcus pneumoniae D39

57.593

100

0.579
  recA Helicobacter pylori 26695

61.162

94.236

0.576
  recA Helicobacter pylori strain NCTC11637

60.856

94.236

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.159

95.965

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

57.267

99.135

0.568
  recA Streptococcus pyogenes NZ131

59.939

94.236

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.394

95.101

0.565
  recA Streptococcus mitis NCTC 12261

60.372

93.084

0.562
  recA Streptococcus mitis SK321

60.372

93.084

0.562
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.084

0.548