Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PFX98_RS05930 Genome accession   NZ_CP116346
Coordinates   1306577..1307614 (-) Length   345 a.a.
NCBI ID   WP_285234256.1    Uniprot ID   -
Organism   Paucibacter sediminis strain S2-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1301577..1312614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFX98_RS05905 (PFX98_05905) - 1302194..1302931 (-) 738 WP_285234251.1 TerC family protein -
  PFX98_RS05910 (PFX98_05910) sucD 1303138..1304031 (-) 894 WP_285234252.1 succinate--CoA ligase subunit alpha -
  PFX98_RS05915 (PFX98_05915) sucC 1304063..1305223 (-) 1161 WP_285234253.1 ADP-forming succinate--CoA ligase subunit beta -
  PFX98_RS05920 (PFX98_05920) - 1305255..1305851 (-) 597 WP_285234254.1 DUF2889 domain-containing protein -
  PFX98_RS05925 (PFX98_05925) - 1306048..1306557 (-) 510 WP_285234255.1 regulatory protein RecX -
  PFX98_RS05930 (PFX98_05930) recA 1306577..1307614 (-) 1038 WP_285234256.1 recombinase RecA Machinery gene
  PFX98_RS05935 (PFX98_05935) - 1307756..1308436 (+) 681 WP_285234257.1 response regulator transcription factor -
  PFX98_RS05940 (PFX98_05940) - 1308452..1309963 (+) 1512 WP_285234258.1 sensor histidine kinase -
  PFX98_RS05945 (PFX98_05945) rodA 1309950..1311107 (-) 1158 WP_285234259.1 rod shape-determining protein RodA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37078.80 Da        Isoelectric Point: 4.9689

>NTDB_id=776787 PFX98_RS05930 WP_285234256.1 1306577..1307614(-) (recA) [Paucibacter sediminis strain S2-9]
MDAPVKAINTEKAKALQAALAQIEKQFGKGSIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKLSGVCAFIDAEHALDIQYAQKLGVNLQELLISQPDTGEQALEIVDALVRSGSVDLIVVDSVAALTPKA
ELEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKK
GEEVIGSETKVKVVKNKVAPPFKTAEFDILYGEGISREGEIIDMGVVAKVVEKSGSWYAYNGEKIGQGKDNAREFLRENR
DVAIEIENKVRESMGVPLLTESEAG

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=776787 PFX98_RS05930 WP_285234256.1 1306577..1307614(-) (recA) [Paucibacter sediminis strain S2-9]
ATGGACGCCCCTGTCAAAGCCATCAACACCGAGAAAGCCAAGGCCCTGCAGGCCGCACTTGCCCAGATCGAAAAGCAATT
CGGCAAGGGTTCCATCATGCGCCTGGGCGAGGGCGAGGTGATTGAAGACATCCAGGTGGTGTCCACCGGCTCGCTGGGCC
TGGACATCGCACTGGGCGTGGGTGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACC
ACGCTGACCCTGCAGGTCATTGCCGAGATGCAAAAGCTCAGCGGTGTCTGCGCCTTCATCGACGCCGAGCATGCGCTGGA
CATCCAGTACGCGCAAAAGCTCGGCGTGAACCTGCAGGAGCTGTTGATCAGCCAGCCCGATACCGGCGAGCAGGCGCTGG
AAATCGTCGATGCCCTGGTGCGCTCGGGTTCGGTGGACCTGATCGTGGTGGACTCGGTGGCCGCACTGACCCCCAAGGCC
GAGCTGGAAGGCGAGATGGGCGACTCCCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGC
CACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCG
AGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGCCGCATCGGCTCGATCAAGAAG
GGTGAAGAGGTGATCGGTTCCGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTTGCGCCCCCCTTCAAGACCGCCGAATT
TGACATCCTCTATGGCGAGGGCATCAGTCGCGAGGGCGAGATCATCGACATGGGCGTGGTGGCCAAGGTGGTGGAGAAGT
CCGGCTCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCGAGTTCCTGCGCGAGAACCGC
GACGTGGCCATCGAGATCGAGAACAAGGTGCGTGAGTCCATGGGCGTGCCGTTGCTGACCGAGAGCGAGGCGGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.032

91.014

0.774
  recA Neisseria gonorrhoeae MS11

71.601

95.942

0.687
  recA Neisseria gonorrhoeae strain FA1090

71.601

95.942

0.687
  recA Neisseria gonorrhoeae MS11

71.601

95.942

0.687
  recA Glaesserella parasuis strain SC1401

71.914

93.913

0.675
  recA Pseudomonas stutzeri DSM 10701

71.254

94.783

0.675
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.606

95.652

0.675
  recA Vibrio cholerae strain A1552

70.606

95.652

0.675
  recA Acinetobacter baylyi ADP1

70.948

94.783

0.672
  recA Acinetobacter baumannii D1279779

70.642

94.783

0.67
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.163

95.942

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.455

95.652

0.626
  recA Helicobacter pylori 26695

65.152

95.652

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

65.749

94.783

0.623
  recA Helicobacter pylori strain NCTC11637

64.848

95.652

0.62
  recA Lactococcus lactis subsp. cremoris KW2

60.231

100

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

62.162

96.522

0.6
  recA Streptococcus mitis SK321

59.118

98.551

0.583
  recA Streptococcus mutans UA159

59.821

97.391

0.583
  recA Streptococcus mitis NCTC 12261

58.824

98.551

0.58
  recA Streptococcus pneumoniae TIGR4

59.701

97.101

0.58
  recA Streptococcus pneumoniae Rx1

59.701

97.101

0.58
  recA Streptococcus pyogenes NZ131

59.701

97.101

0.58
  recA Streptococcus pneumoniae D39

59.701

97.101

0.58
  recA Streptococcus pneumoniae R6

59.701

97.101

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.121

95.942

0.577