Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PJW05_RS21040 Genome accession   NZ_CP116304
Coordinates   4529783..4530832 (-) Length   349 a.a.
NCBI ID   WP_271408890.1    Uniprot ID   -
Organism   Pseudomonas sp. Q1-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4524783..4535832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW05_RS21010 erdR 4524859..4525509 (-) 651 WP_271408884.1 response regulator transcription factor ErdR -
  PJW05_RS21015 - 4525712..4526617 (+) 906 WP_271408885.1 DMT family transporter -
  PJW05_RS21020 - 4526618..4527328 (-) 711 WP_271408886.1 tRNA-uridine aminocarboxypropyltransferase -
  PJW05_RS21025 - 4527542..4527955 (+) 414 WP_271408887.1 quorum-sensing-regulated virulence factor family protein -
  PJW05_RS21030 - 4528160..4529239 (+) 1080 WP_271408888.1 LOG family protein -
  PJW05_RS21035 recX 4529311..4529775 (-) 465 WP_271408889.1 recombination regulator RecX -
  PJW05_RS21040 recA 4529783..4530832 (-) 1050 WP_271408890.1 recombinase RecA Machinery gene
  PJW05_RS21045 - 4530920..4531432 (-) 513 WP_271408891.1 CinA family protein -
  PJW05_RS21050 mutS 4531503..4534070 (+) 2568 WP_271408892.1 DNA mismatch repair protein MutS -
  PJW05_RS21055 fdxA 4534211..4534534 (+) 324 WP_271408893.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37197.62 Da        Isoelectric Point: 5.3189

>NTDB_id=776516 PJW05_RS21040 WP_271408890.1 4529783..4530832(-) (recA) [Pseudomonas sp. Q1-7]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSE
TRVKVVKNKVAPPFRQAEFQIMYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGNKIGQGKANAAKYLEENREVGSAIEK
IIREKLLVDAAANKSAATADADDLADVDL

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=776516 PJW05_RS21040 WP_271408890.1 4529783..4530832(-) (recA) [Pseudomonas sp. Q1-7]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCTGCCCTGGGCCAGATCGAGAAACAGTTCGGCAAAGGCGCGGTCATGCG
CATGGGCGACCACGACCGCCAGGCCATCCCGGCCATTTCCACCGGCTCCCTGGGCCTGGACATCGCCCTTGGCATCGGTG
GCCTGCCGAAAGGCCGTATCGTCGAGATCTACGGTCCTGAGTCTTCCGGTAAGACCACCCTGACCCTTTCCGTCATCGCC
GAAGCCCAGAAACTGGGCGCGACCTGCGCCTTCGTCGACGCTGAGCACGCCCTGGATCCGGACTACGCCGGCAAGCTCGG
CGTGAACGTGGACGACCTGCTGGTCTCCCAGCCGGACACTGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTACGCT
CCAACGCCGTCGACGTGATCATCGTCGACTCCGTGGCTGCCCTGGTGCCGAAGGCCGAAATCGAAGGTGAAATGGGTGAC
TCCCACGTCGGCCTCCAGGCGCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGCAATATCAAGAATGCCAATTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGTAACGCCC
TCAAGTTCTACGCTTCCGTGCGCCTCGACATCCGCCGTACCGGCGCGGTAAAGGAAGGCGAGGAAGTCGTGGGCAGCGAA
ACTCGCGTCAAGGTCGTGAAGAACAAGGTTGCTCCGCCTTTCCGCCAGGCCGAGTTCCAGATCATGTACGGCAAGGGCAT
CTACCGTACCGGCGAGATCATCGACCTGGGTGTACAGCTCGGCCTGGTAGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAATAAGATCGGCCAAGGCAAGGCCAACGCTGCCAAGTACCTGGAAGAAAACCGGGAAGTCGGCAGCGCCATCGAGAAG
ATCATTCGCGAGAAGCTGCTGGTCGATGCCGCAGCCAACAAGTCTGCGGCCACCGCCGACGCTGATGATCTGGCCGACGT
AGACCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.831

100

0.908
  recA Vibrio cholerae strain A1552

73.639

100

0.736
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.639

100

0.736
  recA Acinetobacter baylyi ADP1

73.487

99.427

0.731
  recA Acinetobacter baumannii D1279779

76.22

93.983

0.716
  recA Glaesserella parasuis strain SC1401

70.809

99.14

0.702
  recA Ralstonia pseudosolanacearum GMI1000

74.277

89.112

0.662
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.837

0.662
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

93.696

0.613
  recA Helicobacter pylori strain NCTC11637

64.526

93.696

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

95.702

0.599
  recA Helicobacter pylori 26695

63.914

93.696

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

63.497

93.41

0.593
  recA Streptococcus mitis SK321

57.88

100

0.579
  recA Streptococcus pyogenes NZ131

56.901

100

0.579
  recA Streptococcus mitis NCTC 12261

57.307

100

0.573
  recA Streptococcus pneumoniae D39

60

94.556

0.567
  recA Streptococcus pneumoniae R6

60

94.556

0.567
  recA Streptococcus pneumoniae Rx1

60

94.556

0.567
  recA Streptococcus pneumoniae TIGR4

60

94.556

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

91.977

0.559
  recA Streptococcus mutans UA159

60

93.123

0.559
  recA Lactococcus lactis subsp. cremoris KW2

58.204

92.55

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.41

0.527