Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PGW89_RS15155 Genome accession   NZ_CP116040
Coordinates   3288929..3289972 (-) Length   347 a.a.
NCBI ID   WP_004639421.1    Uniprot ID   A0AAJ3D8Q0
Organism   Acinetobacter haemolyticus strain HW-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3283929..3294972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS15125 (PGW89_15125) - 3284110..3284565 (+) 456 WP_004639427.1 phasin family protein -
  PGW89_RS15130 (PGW89_15130) - 3284735..3285007 (+) 273 WP_004639426.1 HU family DNA-binding protein -
  PGW89_RS15135 (PGW89_15135) - 3285147..3287018 (+) 1872 WP_113997184.1 SurA N-terminal domain-containing protein -
  PGW89_RS15140 (PGW89_15140) - 3287090..3287899 (-) 810 WP_113997185.1 YbgF trimerization domain-containing protein -
  PGW89_RS15150 (PGW89_15150) - 3288335..3288817 (-) 483 WP_005082704.1 regulatory protein RecX -
  PGW89_RS15155 (PGW89_15155) recA 3288929..3289972 (-) 1044 WP_004639421.1 recombinase RecA Machinery gene
  PGW89_RS15160 (PGW89_15160) - 3290144..3290572 (-) 429 WP_004639420.1 S4 domain-containing protein -
  PGW89_RS15165 (PGW89_15165) - 3290556..3291257 (-) 702 WP_113997186.1 HAD-IA family hydrolase -
  PGW89_RS15170 (PGW89_15170) - 3291269..3292126 (+) 858 WP_113997187.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PGW89_RS15175 (PGW89_15175) - 3292180..3292914 (+) 735 WP_004639417.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37671.06 Da        Isoelectric Point: 4.9359

>NTDB_id=775518 PGW89_RS15155 WP_004639421.1 3288929..3289972(-) (recA) [Acinetobacter haemolyticus strain HW-2]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAQEIEK
LIREQLLTKNSNEAAAVEEDELDLLES

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=775518 PGW89_RS15155 WP_004639421.1 3288929..3289972(-) (recA) [Acinetobacter haemolyticus strain HW-2]
ATGGATGATAATAAAAGTAAAGCGTTACAAGCCGCTTTAAGCCAAATTGAAAAACAATTTGGTAAAAACACAGTGATGCG
CTTAGGTGATAATACCGTACAAGCAGTTGAAGCTGTATCAACGGGTTCTCTAACACTTGATATTGCGCTTGGTATTGGTG
GTTTACCCAAAGGGCGTATCATCGAAATCTATGGACCAGAATCTTCTGGTAAAACCACAATGACTTTGCAAGCCATTGCT
CAATGCCAAAAAACTGGTGGTACATGTGCATTTATCGATGCAGAGCATGCCTTAGACCCTGAATATGCACGTAAATTAGG
CGTAGATATTGACAACTTGTTGGTTTCACAACCTGACAACGGTGAACAAGCATTAGAGATTGCGGATATGCTGGTTCGTT
CTGGCGCAATTGATCTTATCGTTGTCGACTCCGTTGCAGCCCTCACCCCTAAAGCGGAAATTGAAGGCGAAATGGGCGAT
TCACATATGGGCTTACAAGCACGTCTGATGAGTCAGGCATTGCGTAAAATCACTGGTAATGCGAAGCGCTCAAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGCGTTATGTTTGGTAGCCCTGAAACAACGACTGGTGGTAATGCAC
TTAAATTCTATGCATCTGTACGCTTAGACATCCGCCGTATCGGTGCAGTGAAAGAAGGTGATGAAATCACCGGTAATGAA
ACTCGCGTTAAAGTTGTTAAAAATAAAATGGCACCGCCTTTCAAAGAAGCAGTGTTCCAGATCATGTATGGTAAAGGTAC
AAATCAACTAGGTGAACTGGTTGATCTTGCAGTTCAACAAGATATCGTTCAAAAAGCAGGTGCTTGGTACTCTTATCAAG
GCAATAAAATCGGTCAAGGTAAGAATAATGTCATCCGCCATTTTGAAGAAAACCCACAAATGGCACAAGAAATTGAAAAG
CTTATTCGTGAACAGCTTCTAACAAAGAACAGCAACGAAGCCGCAGCAGTGGAAGAAGATGAGCTAGATCTTCTAGAAAG
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

92.775

99.712

0.925
  recA Acinetobacter baylyi ADP1

91.404

100

0.919
  recA Pseudomonas stutzeri DSM 10701

73.547

99.135

0.729
  recA Vibrio cholerae strain A1552

74.312

94.236

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.236

0.7
  recA Glaesserella parasuis strain SC1401

68.328

98.271

0.671
  recA Ralstonia pseudosolanacearum GMI1000

68.902

94.524

0.651
  recA Neisseria gonorrhoeae MS11

68.827

93.372

0.643
  recA Neisseria gonorrhoeae MS11

68.827

93.372

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.372

0.643
  recA Helicobacter pylori strain NCTC11637

64.072

96.254

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

96.254

0.617
  recA Helicobacter pylori 26695

62.573

98.559

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Streptococcus mitis SK321

59.078

100

0.591
  recA Streptococcus mitis NCTC 12261

59.531

98.271

0.585
  recA Streptococcus mutans UA159

58.333

100

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.444

90.778

0.585
  recA Streptococcus pyogenes NZ131

61.846

93.66

0.579
  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579
  recA Streptococcus pneumoniae D39

61.656

93.948

0.579
  recA Streptococcus pneumoniae R6

61.656

93.948

0.579
  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

92.795

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.084

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.507

0.55