Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PGH12_RS09365 Genome accession   NZ_CP116034
Coordinates   2038412..2039419 (+) Length   335 a.a.
NCBI ID   WP_267599612.1    Uniprot ID   -
Organism   Chryseobacterium sp. CY350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2033412..2044419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH12_RS09350 (PGH12_09350) - 2034298..2034672 (+) 375 WP_267599615.1 hypothetical protein -
  PGH12_RS09355 (PGH12_09355) - 2034691..2036871 (+) 2181 WP_267599614.1 reprolysin-like metallopeptidase -
  PGH12_RS09360 (PGH12_09360) - 2036999..2038195 (+) 1197 WP_267599613.1 oxygenase MpaB family protein -
  PGH12_RS09365 (PGH12_09365) recA 2038412..2039419 (+) 1008 WP_267599612.1 recombinase RecA Machinery gene
  PGH12_RS09370 (PGH12_09370) htpG 2039683..2041575 (+) 1893 WP_267599611.1 molecular chaperone HtpG -
  PGH12_RS09375 (PGH12_09375) - 2041860..2042156 (-) 297 WP_267599610.1 MGMT family protein -
  PGH12_RS09380 (PGH12_09380) - 2042322..2043113 (+) 792 WP_267599609.1 glucose 1-dehydrogenase -
  PGH12_RS09385 (PGH12_09385) - 2043195..2043341 (+) 147 WP_267599608.1 hypothetical protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 35923.28 Da        Isoelectric Point: 5.8932

>NTDB_id=775438 PGH12_RS09365 WP_267599612.1 2038412..2039419(+) (recA) [Chryseobacterium sp. CY350]
MSNIEDKKKALALVLDKLDKTYGKGTVMTLGDSAIDTNIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRGYAGKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKNGDEA
VGSRVKVKIVKNKVAPPFKMAEFDIMYGEGVSKTGEILDTAVDMGIVKKSGSWFSYGETKLGQGRDGVRDLLKDNPELAE
ELENKVKEEIINNKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=775438 PGH12_RS09365 WP_267599612.1 2038412..2039419(+) (recA) [Chryseobacterium sp. CY350]
ATGAGTAACATTGAAGATAAGAAAAAAGCACTGGCTTTGGTGCTTGATAAACTAGATAAAACATACGGAAAAGGAACGGT
AATGACTTTGGGTGATAGTGCGATTGACACTAATATCGAAGTGATTCCTTCAGGATCTTTAGGATTAGATATTGCGTTGG
GCGTTGGTGGTTATCCGAGAGGAAGAATCATTGAAATCTACGGACCTGAATCATCCGGTAAGACAACTTTAACTTTACAT
GCAATTGCAGAAGCTCAAAAAGCGGGAGGAATTGCAGCTTTCATCGATGCCGAGCATGCATTCGATCGAGGTTATGCAGG
AAAGTTAGGAATTGATCTTGAGAATTTGATTATTTCTCAGCCCGATAATGGTGAACAGGCATTGGAAATTGCTGACAACC
TTATTCGTTCGGGTGCTATTGATATTGTAGTAATTGACTCTGTTGCAGCATTAACTCCAAAAGCTGAAATTGAAGGCGAA
ATGGGAGATTCTAAAATGGGTCTTCACGCAAGATTGATGTCTCAGGCTTTAAGAAAATTAACTGCGACTATTTCGAGAAC
GAAATGTACGGTGATCTTCATTAACCAGTTAAGAGAAAAGATTGGCGTAATGTTCGGAAATCCTGAAACCACAACGGGTG
GTAATGCCCTGAAATTTTACGCTTCTGTGAGAGTTGACATCAGAAAAGCAAGTGCACCGATCAAAAACGGTGACGAAGCT
GTGGGAAGCCGCGTGAAGGTTAAAATTGTAAAAAACAAAGTTGCTCCACCTTTCAAAATGGCAGAATTTGATATTATGTA
CGGTGAAGGAGTTTCTAAAACCGGAGAAATCTTAGATACTGCTGTTGATATGGGAATTGTGAAGAAAAGCGGTTCTTGGT
TCAGTTATGGTGAAACAAAACTTGGTCAGGGACGAGACGGCGTAAGAGATTTGTTGAAAGACAATCCTGAATTAGCTGAA
GAGCTTGAAAACAAAGTAAAAGAAGAAATTATTAACAACAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.697

98.507

0.785
  recA Ralstonia pseudosolanacearum GMI1000

63.501

100

0.639
  recA Acinetobacter baumannii D1279779

63.914

97.612

0.624
  recA Glaesserella parasuis strain SC1401

63.222

98.209

0.621
  recA Acinetobacter baylyi ADP1

62.997

97.612

0.615
  recA Helicobacter pylori strain NCTC11637

61.747

99.104

0.612
  recA Helicobacter pylori 26695

61.747

99.104

0.612
  recA Neisseria gonorrhoeae MS11

63.158

96.418

0.609
  recA Neisseria gonorrhoeae MS11

63.158

96.418

0.609
  recA Neisseria gonorrhoeae strain FA1090

63.158

96.418

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.385

97.612

0.609
  recA Streptococcus mitis NCTC 12261

59.238

100

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

61.656

97.313

0.6
  recA Vibrio cholerae strain A1552

60.79

98.209

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.79

98.209

0.597
  recA Pseudomonas stutzeri DSM 10701

60.856

97.612

0.594
  recA Streptococcus mitis SK321

60.615

97.015

0.588
  recA Lactococcus lactis subsp. cremoris KW2

59.816

97.313

0.582
  recA Streptococcus pyogenes NZ131

59.816

97.313

0.582
  recA Streptococcus pneumoniae Rx1

60

97.015

0.582
  recA Streptococcus pneumoniae D39

60

97.015

0.582
  recA Streptococcus pneumoniae R6

60

97.015

0.582
  recA Streptococcus pneumoniae TIGR4

60

97.015

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

59.752

96.418

0.576
  recA Streptococcus mutans UA159

59.021

97.612

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.576

98.507

0.567