Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PE065_RS06405 Genome accession   NZ_CP116008
Coordinates   1402340..1403341 (+) Length   333 a.a.
NCBI ID   WP_076390821.1    Uniprot ID   A0A2U0DS36
Organism   Chryseobacterium gambrini strain DMF-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1397340..1408341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE065_RS06385 (PE065_06385) gap 1397958..1398968 (+) 1011 WP_271248278.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  PE065_RS06390 (PE065_06390) - 1399049..1399672 (+) 624 WP_271248279.1 hypothetical protein -
  PE065_RS06395 (PE065_06395) - 1399992..1400768 (+) 777 WP_271248280.1 response regulator transcription factor -
  PE065_RS06400 (PE065_06400) - 1400885..1402069 (+) 1185 WP_271248281.1 oxygenase MpaB family protein -
  PE065_RS06405 (PE065_06405) recA 1402340..1403341 (+) 1002 WP_076390821.1 recombinase RecA Machinery gene
  PE065_RS06410 (PE065_06410) - 1403408..1406305 (-) 2898 WP_271248282.1 prolyl oligopeptidase family serine peptidase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35805.02 Da        Isoelectric Point: 5.5685

>NTDB_id=774893 PE065_RS06405 WP_076390821.1 1402340..1403341(+) (recA) [Chryseobacterium gambrini strain DMF-6]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDSSVDNTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRGYAGKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKTGEILDQAVEQGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPELAE
ELENKIKEELKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=774893 PE065_RS06405 WP_076390821.1 1402340..1403341(+) (recA) [Chryseobacterium gambrini strain DMF-6]
ATGAGTAACATAGACGATAAGAAAAAAGCACTGGCTCTGGTGCTGGACAAACTAGATAAAACATACGGAAAAGGAACTGT
GATGACGTTGGGAGACAGTTCTGTAGACAACACAATTGAGGTGATTCCTTCAGGATCTTTAGGATTGGACATCGCTCTTG
GAGTGGGTGGTTATCCGAGAGGAAGAATCATTGAGATCTACGGTCCCGAATCTTCCGGTAAAACAACTTTAACGCTTCAC
GCGATTGCAGAAGCTCAGAAAGCCGGAGGTATTGCTGCATTTATTGATGCTGAGCATGCTTTTGACAGAGGTTATGCAGG
AAAATTAGGAATTGATCTTGAAAACCTTATTATTTCTCAGCCAGACAACGGAGAACAGGCATTGGAAATTGCTGATAACC
TGATCCGTTCGGGAGCGATTGATATCGTGGTGATCGACTCGGTTGCTGCGCTTACGCCAAAAGCGGAGATCGAAGGAGAA
ATGGGAGATTCTAAAATGGGTCTTCACGCAAGATTGATGTCTCAGGCTTTAAGAAAATTAACAGCAACCATTTCAAGAAC
AAAATGTACGGTTATTTTCATCAACCAGTTGAGAGAGAAAATCGGAGTAATGTTTGGAAATCCTGAAACTACAACGGGTG
GTAACGCTTTGAAATTCTATGCTTCGGTAAGAGTTGACATCAGAAAGGCAAGTGCGCCAATCAAGCAGGGAGATGAAGCG
ATCGGAAGCCGTGTGAAAGTGAAAATTGTTAAGAATAAAGTTGCCCCGCCTTTCAAACAGGCAGAATTCGACATCATGTA
CGGTGAAGGGGTTTCTAAAACAGGAGAAATTCTGGATCAGGCTGTAGAACAGGGAATTGTAAAGAAAAGCGGTTCATGGT
TCAGCTACGAAGAAACGAAGCTTGGACAAGGTCGTGATGCAGTAAAAGATGTTTTAAAAGACAATCCTGAACTTGCGGAA
GAACTGGAAAACAAAATTAAAGAAGAACTTAAGAATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U0DS36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.18

100

0.802
  recA Acinetobacter baylyi ADP1

64.742

98.799

0.64
  recA Acinetobacter baumannii D1279779

64.724

97.898

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

98.198

0.634
  recA Glaesserella parasuis strain SC1401

64.11

97.898

0.628
  recA Ralstonia pseudosolanacearum GMI1000

66.454

93.994

0.625
  recA Helicobacter pylori strain NCTC11637

62.997

98.198

0.619
  recA Helicobacter pylori 26695

62.997

98.198

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

62.883

97.898

0.616
  recA Neisseria gonorrhoeae MS11

63.467

96.997

0.616
  recA Neisseria gonorrhoeae MS11

63.467

96.997

0.616
  recA Neisseria gonorrhoeae strain FA1090

63.467

96.997

0.616
  recA Pseudomonas stutzeri DSM 10701

61.656

97.898

0.604
  recA Lactococcus lactis subsp. cremoris KW2

58.876

100

0.598
  recA Streptococcus pyogenes NZ131

60.245

98.198

0.592
  recA Vibrio cholerae strain A1552

60.061

98.498

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.061

98.498

0.592
  recA Streptococcus mitis NCTC 12261

60.429

97.898

0.592
  recA Streptococcus mitis SK321

60.429

97.898

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

96.997

0.583
  recA Streptococcus mutans UA159

59.327

98.198

0.583
  recA Streptococcus pneumoniae D39

58.537

98.498

0.577
  recA Streptococcus pneumoniae Rx1

58.537

98.498

0.577
  recA Streptococcus pneumoniae R6

58.537

98.498

0.577
  recA Streptococcus pneumoniae TIGR4

58.537

98.498

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.589

99.399

0.553