Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OW730_RS14205 Genome accession   NZ_CP115913
Coordinates   3084719..3085762 (+) Length   347 a.a.
NCBI ID   WP_271224716.1    Uniprot ID   -
Organism   Oceanirhabdus sp. W0125-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3079719..3090762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OW730_RS14190 (OW730_14190) - 3079819..3082230 (+) 2412 WP_271224713.1 DNA translocase FtsK -
  OW730_RS14195 (OW730_14195) rimO 3082310..3083644 (+) 1335 WP_271224714.1 30S ribosomal protein S12 methylthiotransferase RimO -
  OW730_RS14200 (OW730_14200) pgsA 3083628..3084170 (+) 543 WP_271224715.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OW730_RS14205 (OW730_14205) recA 3084719..3085762 (+) 1044 WP_271224716.1 recombinase RecA Machinery gene
  OW730_RS14210 (OW730_14210) rny 3086006..3087556 (+) 1551 WP_271224717.1 ribonuclease Y -
  OW730_RS14215 (OW730_14215) - 3087730..3087852 (-) 123 WP_271224718.1 hypothetical protein -
  OW730_RS14220 (OW730_14220) - 3088106..3089299 (+) 1194 WP_271224719.1 pyridoxal phosphate-dependent aminotransferase -
  OW730_RS14225 (OW730_14225) - 3089378..3090352 (+) 975 WP_271224720.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37140.56 Da        Isoelectric Point: 8.2887

>NTDB_id=774349 OW730_RS14205 WP_271224716.1 3084719..3085762(+) (recA) [Oceanirhabdus sp. W0125-5]
MNSEKLKAIESAMGQIEKQFGKGSIMKLGEKKAVNIGAISTGSLSLDIALGVGGVPKGRIIEIYGPESSGKTTVALHIIA
EAQKTGGAVAFVDAEHALDPIYAGNLGVDVDNLIVSQPDTGEQALEITEALVRSGAIDVIVVDSVAALVPKAEIEGEMGA
SHVGLQARLMSQALRKLAGSISKSNTVAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRSDTIKQGDEFKGNR
TKVKIIKNKVAPPFKTAEFDIMYGQGISKEGNLVDVGVKEEIIQKSGAWFAYGDIRLGQGRENAKNFLAENIDIAMEIES
RIRAKYNLPVSDVNADNSEDKKEKKAK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=774349 OW730_RS14205 WP_271224716.1 3084719..3085762(+) (recA) [Oceanirhabdus sp. W0125-5]
ATGAATAGTGAGAAATTAAAAGCAATAGAATCAGCGATGGGACAGATAGAGAAGCAGTTTGGTAAAGGCTCAATAATGAA
ACTAGGGGAGAAAAAGGCTGTAAATATAGGCGCAATCTCAACTGGAAGTTTAAGTTTAGATATAGCATTAGGTGTAGGTG
GAGTTCCAAAAGGAAGAATAATTGAAATTTATGGACCAGAAAGTTCTGGTAAAACAACAGTTGCATTACATATAATTGCA
GAAGCTCAAAAAACAGGTGGAGCTGTAGCATTTGTAGATGCAGAACATGCACTTGATCCAATTTACGCAGGTAACTTAGG
TGTTGATGTAGATAATCTGATAGTATCTCAACCAGATACTGGAGAACAAGCACTTGAAATTACAGAAGCTCTTGTAAGAA
GTGGAGCTATTGATGTAATCGTAGTTGACTCAGTTGCAGCTTTAGTACCTAAAGCTGAGATTGAAGGGGAAATGGGAGCT
TCTCATGTTGGATTGCAAGCGAGACTTATGTCACAAGCTCTTAGAAAGTTAGCGGGAAGTATTAGTAAATCTAACACAGT
AGCGATATTTATTAACCAGCTTAGAGAAAAAGTTGGAGTAATGTTTGGAAATCCTGAAACAACTCCAGGAGGAAGAGCAT
TAAAGTTCTATTCATCTGTTAGATTAGATGTAAGAAGAAGTGACACAATAAAACAAGGTGATGAATTTAAAGGTAACAGA
ACAAAAGTTAAGATTATAAAGAATAAAGTAGCACCACCTTTTAAAACAGCAGAATTTGATATTATGTATGGTCAAGGAAT
TTCCAAAGAAGGAAATTTAGTAGATGTAGGTGTTAAAGAAGAAATCATTCAAAAGAGTGGAGCTTGGTTTGCATATGGAG
ATATCAGATTGGGTCAAGGAAGAGAAAATGCTAAAAATTTCTTAGCTGAAAATATTGATATTGCTATGGAAATTGAAAGT
AGAATTAGAGCAAAATATAATCTACCAGTTTCTGATGTTAATGCAGACAACAGTGAAGATAAAAAAGAAAAAAAAGCTAA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.859

93.948

0.666
  recA Latilactobacillus sakei subsp. sakei 23K

66.364

95.101

0.631
  recA Streptococcus pneumoniae R6

61.823

100

0.625
  recA Streptococcus pneumoniae Rx1

61.823

100

0.625
  recA Streptococcus pneumoniae D39

61.823

100

0.625
  recA Streptococcus pneumoniae TIGR4

61.823

100

0.625
  recA Neisseria gonorrhoeae MS11

66.154

93.66

0.62
  recA Neisseria gonorrhoeae MS11

66.154

93.66

0.62
  recA Neisseria gonorrhoeae strain FA1090

66.154

93.66

0.62
  recA Streptococcus mutans UA159

61.494

100

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.049

93.372

0.617
  recA Streptococcus mitis SK321

61.739

99.424

0.614
  recA Pseudomonas stutzeri DSM 10701

65.538

93.66

0.614
  recA Acinetobacter baylyi ADP1

61.808

98.847

0.611
  recA Streptococcus mitis NCTC 12261

63.855

95.677

0.611
  recA Helicobacter pylori strain NCTC11637

65.123

93.372

0.608
  recA Helicobacter pylori 26695

64.815

93.372

0.605
  recA Lactococcus lactis subsp. cremoris KW2

63.636

95.101

0.605
  recA Acinetobacter baumannii D1279779

64.308

93.66

0.602
  recA Ralstonia pseudosolanacearum GMI1000

64.706

93.084

0.602
  recA Streptococcus pyogenes NZ131

63.609

94.236

0.599
  recA Vibrio cholerae strain A1552

64.087

93.084

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.087

93.084

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.727

95.101

0.597
  recA Glaesserella parasuis strain SC1401

64.062

92.219

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

92.795

0.582