Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PAF20_RS03860 Genome accession   NZ_CP115775
Coordinates   770320..771378 (+) Length   352 a.a.
NCBI ID   WP_271072424.1    Uniprot ID   -
Organism   Paracoccus albus strain SCSIO 80058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 765320..776378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAF20_RS18820 - 765468..765794 (+) 327 WP_353620607.1 hypothetical protein -
  PAF20_RS03840 (PAF20_03840) - 765794..766030 (+) 237 WP_271072421.1 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein -
  PAF20_RS03845 (PAF20_03845) - 766289..767449 (+) 1161 WP_271073251.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  PAF20_RS03850 (PAF20_03850) - 767516..769549 (+) 2034 WP_271072422.1 ATP-binding protein -
  PAF20_RS03855 (PAF20_03855) - 769546..770118 (-) 573 WP_271072423.1 hypothetical protein -
  PAF20_RS03860 (PAF20_03860) recA 770320..771378 (+) 1059 WP_271072424.1 recombinase RecA Machinery gene
  PAF20_RS03865 (PAF20_03865) - 771691..772674 (+) 984 WP_271072425.1 imelysin family protein -
  PAF20_RS03870 (PAF20_03870) - 772674..773747 (+) 1074 WP_271072426.1 DUF1513 domain-containing protein -
  PAF20_RS03875 (PAF20_03875) - 773744..774088 (-) 345 WP_271072427.1 hypothetical protein -
  PAF20_RS03880 (PAF20_03880) - 774159..775949 (-) 1791 WP_271072428.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37867.89 Da        Isoelectric Point: 4.8799

>NTDB_id=773710 PAF20_RS03860 WP_271072424.1 770320..771378(+) (recA) [Paracoccus albus strain SCSIO 80058]
MSDTNMDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIYGPESSGK
TTLTLHAVAEEQKKGGVCAFVDAEHALDPHYARKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVNMVVVDSVAALTPK
SEIEGDMGDHQVGAQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRIGSIK
DRDEVVGNSTRVKVVKNKVAPPFRQVEFDIMYGEGISKTGELIDLGVKAGVVEKSGSWYSYGDQRIGQGRENAKQFLSDN
PDMAMEVEDKIRASHGLDFASSEDDSEVLTDD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=773710 PAF20_RS03860 WP_271072424.1 770320..771378(+) (recA) [Paracoccus albus strain SCSIO 80058]
ATGAGCGATACGAACATGGATAAGAGATCGGCCGACAAGCAAAAGGCTCTCGACAGCGCGCTTGCGCAAATTGAACGGCA
GTTCGGCAAAGGCTCCATCATGAAGCTCGGGGCGGACAACCCTGTGGCCGAAATTGAGGCGACATCTACCGGTTCCCTCG
GTCTGGACATCGCGCTCGGCATTGGTGGCCTGCCCAAGGGACGTATTATCGAAATTTATGGACCGGAAAGCTCTGGTAAG
ACCACGCTGACGCTGCACGCAGTGGCTGAAGAACAGAAGAAGGGCGGCGTTTGCGCCTTTGTCGACGCGGAACATGCGTT
GGATCCACATTACGCGCGAAAGCTGGGCGTCAATCTGGATGAGTTGCTGATCTCTCAGCCCGATACGGGTGAGCAGGCGC
TTGAGATTGTCGATACATTGGTCCGTTCTGGCGCGGTCAACATGGTCGTGGTCGATTCTGTTGCTGCGCTGACGCCGAAA
TCGGAAATCGAAGGCGATATGGGCGACCATCAGGTCGGCGCACAGGCCCGCCTGATGAGCCAGGCGATGCGCAAATTGAC
TGCCAGTATCGGCCGCTCGAACTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCAGTC
CGGAAACAACCTCGGGTGGCAATGCGCTGAAATTCTACGCTTCTGTCCGGCTGGATATTCGTCGTATTGGTTCGATCAAG
GATCGCGATGAAGTTGTCGGCAACAGCACGCGCGTCAAGGTTGTGAAGAACAAGGTTGCGCCACCTTTCCGGCAGGTCGA
ATTTGACATCATGTATGGTGAGGGAATTTCCAAAACGGGAGAACTGATTGACCTTGGTGTGAAGGCTGGTGTCGTCGAAA
AATCCGGCTCTTGGTATTCCTATGGCGATCAGCGGATCGGTCAGGGTCGTGAAAATGCAAAACAGTTCCTGAGCGACAAT
CCCGACATGGCAATGGAAGTCGAAGACAAGATCCGCGCCAGTCATGGGCTGGACTTCGCAAGCTCGGAAGACGATTCCGA
AGTTTTGACCGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

72.866

93.182

0.679
  recA Neisseria gonorrhoeae MS11

69.76

94.886

0.662
  recA Neisseria gonorrhoeae MS11

69.76

94.886

0.662
  recA Neisseria gonorrhoeae strain FA1090

69.76

94.886

0.662
  recA Pseudomonas stutzeri DSM 10701

70.497

91.477

0.645
  recA Glaesserella parasuis strain SC1401

70.625

90.909

0.642
  recA Acinetobacter baylyi ADP1

66.372

96.307

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.47

91.193

0.634
  recA Vibrio cholerae strain A1552

69.47

91.193

0.634
  recA Acinetobacter baumannii D1279779

69.159

91.193

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.683

93.182

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.875

95.739

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.392

95.739

0.616
  recA Helicobacter pylori strain NCTC11637

66.564

92.614

0.616
  recA Helicobacter pylori 26695

66.564

92.614

0.616
  recA Streptococcus mitis NCTC 12261

59.943

100

0.599
  recA Lactococcus lactis subsp. cremoris KW2

59.155

100

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

60.057

98.864

0.594
  recA Streptococcus mitis SK321

61.976

94.886

0.588
  recA Streptococcus pneumoniae Rx1

61.677

94.886

0.585
  recA Streptococcus pneumoniae D39

61.677

94.886

0.585
  recA Streptococcus pneumoniae R6

61.677

94.886

0.585
  recA Streptococcus pneumoniae TIGR4

61.677

94.886

0.585
  recA Streptococcus mutans UA159

59.412

96.591

0.574
  recA Streptococcus pyogenes NZ131

60.486

93.466

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

92.045

0.551