Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PAF12_RS07835 Genome accession   NZ_CP115757
Coordinates   1623004..1624062 (-) Length   352 a.a.
NCBI ID   WP_271109605.1    Uniprot ID   -
Organism   Paracoccus sp. SCSIO 75233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1618004..1629062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAF12_RS07815 (PAF12_07815) - 1618434..1620224 (+) 1791 WP_271109601.1 extracellular solute-binding protein -
  PAF12_RS07820 (PAF12_07820) - 1620296..1620625 (+) 330 WP_271109602.1 hypothetical protein -
  PAF12_RS07825 (PAF12_07825) - 1620634..1621710 (-) 1077 WP_271109603.1 DUF1513 domain-containing protein -
  PAF12_RS07830 (PAF12_07830) - 1621710..1622693 (-) 984 WP_271109604.1 imelysin family protein -
  PAF12_RS07835 (PAF12_07835) recA 1623004..1624062 (-) 1059 WP_271109605.1 recombinase RecA Machinery gene
  PAF12_RS07840 (PAF12_07840) - 1624267..1624851 (+) 585 WP_271109606.1 hypothetical protein -
  PAF12_RS07845 (PAF12_07845) - 1624840..1626837 (-) 1998 WP_271109607.1 ATP-binding protein -
  PAF12_RS07850 (PAF12_07850) - 1626941..1628107 (-) 1167 WP_271109608.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37895.10 Da        Isoelectric Point: 4.9837

>NTDB_id=773698 PAF12_RS07835 WP_271109605.1 1623004..1624062(-) (recA) [Paracoccus sp. SCSIO 75233]
MSELDMDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIYGPESSGK
TTLTLHAVAEEQKKGGVCAFVDAEHALDPHYARKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVNMVVVDSVAALTPK
SEIEGDMGDHQVGAQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRIGSIK
DRDEVVGNTTRVKVVKNKVAPPFRQVEFDIMYGEGISKMGELVDLGVKAGVVDKSGAWYSYGDERIGQGRENAKQFLREN
AAMAHEIEDKIRASHGLEFDAATGEDDVLAEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=773698 PAF12_RS07835 WP_271109605.1 1623004..1624062(-) (recA) [Paracoccus sp. SCSIO 75233]
ATGAGCGAATTAGACATGGATAAAAGATCGGCCGACAAGCAAAAGGCGCTCGACAGCGCGTTGGCACAGATTGAACGGCA
GTTCGGCAAGGGCTCGATCATGAAGCTCGGCGCGGATAATCCCGTGGCGGAGATCGAGGCGACGTCGACGGGTTCGCTGG
GCCTGGATATCGCGCTTGGCATTGGCGGTTTGCCGAAGGGCCGGATTATCGAAATTTACGGCCCGGAAAGCTCCGGCAAG
ACGACGCTGACGCTGCATGCCGTTGCGGAAGAGCAGAAGAAGGGCGGGGTCTGTGCGTTTGTCGACGCGGAACACGCGCT
CGATCCGCATTATGCGCGCAAGCTGGGTGTGAATCTCGATGAATTGCTGATCTCCCAGCCGGATACGGGCGAGCAGGCGC
TGGAGATCGTGGACACGCTGGTGCGGTCCGGCGCGGTCAATATGGTGGTTGTGGATTCGGTCGCGGCGCTGACCCCGAAA
TCGGAAATCGAAGGCGATATGGGCGACCATCAGGTCGGCGCACAGGCCCGGCTGATGAGCCAGGCGATGCGCAAGCTGAC
CGCCTCGATCGGGCGGTCGAACTGCATGGTGATTTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTCGGCAGCC
CTGAGACCACCTCGGGCGGGAACGCGCTGAAATTCTACGCCTCGGTGCGGCTGGACATCCGCCGTATCGGCTCCATCAAG
GACCGGGACGAGGTGGTCGGCAACACCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTTCCGGCAGGTGGA
ATTCGACATCATGTATGGCGAAGGCATCTCCAAGATGGGCGAGCTGGTCGATCTGGGCGTCAAGGCTGGCGTGGTCGATA
AATCCGGTGCCTGGTACTCTTATGGTGACGAGCGTATCGGGCAGGGCCGGGAAAACGCCAAGCAGTTCCTGCGCGAAAAC
GCGGCGATGGCACATGAGATCGAGGACAAGATCCGGGCCAGTCACGGGCTGGAATTCGATGCCGCAACCGGCGAGGATGA
CGTGCTCGCGGAGGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

74.085

93.182

0.69
  recA Neisseria gonorrhoeae MS11

69.822

96.023

0.67
  recA Neisseria gonorrhoeae MS11

69.822

96.023

0.67
  recA Neisseria gonorrhoeae strain FA1090

69.822

96.023

0.67
  recA Glaesserella parasuis strain SC1401

71.25

90.909

0.648
  recA Pseudomonas stutzeri DSM 10701

70.497

91.477

0.645
  recA Acinetobacter baumannii D1279779

70.405

91.193

0.642
  recA Acinetobacter baylyi ADP1

70.093

91.193

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.469

95.739

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.159

91.193

0.631
  recA Vibrio cholerae strain A1552

69.159

91.193

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.378

93.182

0.628
  recA Helicobacter pylori strain NCTC11637

67.791

92.614

0.628
  recA Helicobacter pylori 26695

67.791

92.614

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.205

95.739

0.605
  recA Streptococcus pneumoniae R6

62.275

94.886

0.591
  recA Streptococcus pneumoniae D39

62.275

94.886

0.591
  recA Streptococcus pneumoniae TIGR4

62.275

94.886

0.591
  recA Streptococcus pneumoniae Rx1

62.275

94.886

0.591
  recA Streptococcus mitis SK321

61.976

94.886

0.588
  recA Streptococcus mitis NCTC 12261

61.976

94.886

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

60.294

96.591

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60.714

95.455

0.58
  recA Streptococcus mutans UA159

60.606

93.75

0.568
  recA Streptococcus pyogenes NZ131

60.79

93.466

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.459

94.602

0.562