Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PDI73_RS00030 Genome accession   NZ_CP115479
Coordinates   7107..8270 (+) Length   387 a.a.
NCBI ID   WP_033900453.1    Uniprot ID   A0A552Z4C8
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2107..13270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS00015 (PDI73_00015) era 3342..4253 (+) 912 WP_277730233.1 GTPase Era -
  PDI73_RS00020 (PDI73_00020) asnB 4350..5942 (+) 1593 WP_010905297.1 asparagine synthase B -
  PDI73_RS00025 (PDI73_00025) mutM 6136..6954 (+) 819 WP_252462306.1 DNA-formamidopyrimidine glycosylase -
  PDI73_RS00030 (PDI73_00030) recA 7107..8270 (+) 1164 WP_033900453.1 recombinase RecA Machinery gene
  PDI73_RS00035 (PDI73_00035) - 8283..9656 (-) 1374 WP_003131627.1 amino acid permease -
  PDI73_RS00040 (PDI73_00040) - 9725..11104 (-) 1380 WP_012897204.1 amino acid permease -
  PDI73_RS00045 (PDI73_00045) - 11251..11631 (+) 381 WP_010905299.1 YlbF family regulator -
  PDI73_RS00050 (PDI73_00050) - 11618..11932 (+) 315 WP_003131624.1 YlbG family protein -
  PDI73_RS00055 (PDI73_00055) - 12163..12681 (+) 519 WP_003131623.1 hypothetical protein -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41463.28 Da        Isoelectric Point: 5.1619

>NTDB_id=772462 PDI73_RS00030 WP_033900453.1 7107..8270(+) (recA) [Lactococcus lactis strain EP2]
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVDEGIIKKSGAWFAYNDEKIGQGA
EKAKNYLKEHQEIFDEIDHKVRAAHGLLDEAEVAETTEDTSTKSKATKAKKEEKVVETEEIELELED

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=772462 PDI73_RS00030 WP_033900453.1 7107..8270(+) (recA) [Lactococcus lactis strain EP2]
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAAAAATATGGCGCTGAACGTGACAAAGCTTTGGCAGATGC
ACTTGCTCTGATTGAAAAAGACTTTGGGAAAGGTTCACTTATGCGTCTTGGCGAAGCAGCCAACCAGAAAGTGTCAGTAG
TAAGTTCAGGCTCACTTGCACTTGATATTGCGCTTGGTGCAGGTGGATATCCTAAAGGACGTATCGTTGAAATCTACGGA
CCAGAATCTTCTGGTAAAACAACAGTCGCTCTTCATGCCGTTGCAGCGGTTCAAAAAGAAGGTGGAATTGCAGCCTTTAT
CGATGCTGAAAATGCGCTTGACCCAGAATATGCAAAAGCGCTCGGTGTCAATATCGATGAACTTTTACTTTCACAACCAG
ACTATGGTGAACAAGGGCTTCAAATTGCTGAAAAATTGATTACATCTGGTGCAGTTGACTTAGTTGTTATTGACTCAGTT
GCAGCTTTGGTACCTAAAGCCGAAATTGACGGTGAAATTGGTGATAGTTCAGTTGGGCTTCAAGCTCGTATGATGTCACA
AGCCATGCGTAAACTTGCAGGACATATTAATAAAACAAAAACAACAGCTATTTTCATCAACCAATTGCGTGAAAAAGTTG
GGGTTATGTTTGGTTCGCCAGAAACAACACCTGGTGGTCGTGCATTGAAATTCTACGCTTCTGTACGTCTTGATGTACGT
GGTTCAACAAAAATCGAAGAAGGTTCTGGAGATAACAAGACCCAAATCGGTAAAATCACAAAAATCAAAGTCGTTAAAAA
TAAAGTGGCTCCACCATTCAAGGTTGCTCTCGTAGATATCATGTTTGGTGAAGGGATTTCAAGAACCGGTGAACTTTTAA
ACATTGCTGTTGATGAAGGAATCATCAAAAAATCAGGCGCTTGGTTTGCTTACAATGACGAAAAAATTGGTCAAGGAGCA
GAAAAAGCGAAGAACTATCTCAAAGAACATCAAGAAATCTTTGATGAAATTGACCATAAAGTTCGTGCCGCACACGGTCT
TCTTGATGAAGCAGAAGTAGCAGAAACTACAGAAGATACTTCAACAAAATCTAAGGCAACTAAAGCTAAAAAAGAAGAAA
AAGTAGTCGAAACTGAAGAAATTGAACTCGAACTTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A552Z4C8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

98.305

91.473

0.899
  recA Streptococcus pneumoniae D39

75.844

99.483

0.755
  recA Streptococcus pneumoniae R6

75.844

99.483

0.755
  recA Streptococcus pneumoniae TIGR4

75.844

99.483

0.755
  recA Streptococcus pneumoniae Rx1

75.844

99.483

0.755
  recA Streptococcus mitis NCTC 12261

74.611

99.742

0.744
  recA Streptococcus mitis SK321

74.093

99.742

0.739
  recA Streptococcus mutans UA159

73.698

99.225

0.731
  recA Streptococcus pyogenes NZ131

79.251

89.664

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

69.298

88.372

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

85.271

0.558
  recA Glaesserella parasuis strain SC1401

54.933

96.899

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

85.013

0.519
  recA Vibrio cholerae strain A1552

61.92

83.463

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

83.463

0.517
  recA Neisseria gonorrhoeae strain FA1090

59.639

85.788

0.512
  recA Neisseria gonorrhoeae MS11

59.639

85.788

0.512
  recA Neisseria gonorrhoeae MS11

59.639

85.788

0.512
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

84.238

0.501
  recA Acinetobacter baylyi ADP1

59.752

83.463

0.499
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.716

84.496

0.496
  recA Pseudomonas stutzeri DSM 10701

58.951

83.721

0.494
  recA Helicobacter pylori 26695

58.055

85.013

0.494
  recA Helicobacter pylori strain NCTC11637

58.055

85.013

0.494
  recA Acinetobacter baumannii D1279779

59.133

83.463

0.494
  recA Ralstonia pseudosolanacearum GMI1000

60.252

81.912

0.494