Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PDI56_RS04110 Genome accession   NZ_CP115473
Coordinates   794167..795210 (-) Length   347 a.a.
NCBI ID   WP_000368166.1    Uniprot ID   P68845
Organism   Staphylococcus aureus strain AF4004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 789167..800210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS04095 (PDI56_04095) - 790771..791568 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  PDI56_RS04100 (PDI56_04100) - 791742..791957 (+) 216 WP_000026308.1 hypothetical protein -
  PDI56_RS04105 (PDI56_04105) rny 792254..793813 (-) 1560 WP_001050913.1 ribonuclease Y -
  PDI56_RS04110 (PDI56_04110) recA 794167..795210 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  PDI56_RS04115 (PDI56_04115) - 795375..796526 (-) 1152 WP_000020347.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  PDI56_RS04120 (PDI56_04120) pgsA 796750..797328 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PDI56_RS04125 (PDI56_04125) - 797362..797754 (-) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  PDI56_RS04130 (PDI56_04130) - 797773..798600 (-) 828 WP_000214890.1 YmfK family protein -
  PDI56_RS04135 (PDI56_04135) - 798705..799409 (-) 705 WP_000646228.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37656.53 Da        Isoelectric Point: 4.8509

>NTDB_id=772265 PDI56_RS04110 WP_000368166.1 794167..795210(-) (recA) [Staphylococcus aureus strain AF4004]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEETEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=772265 PDI56_RS04110 WP_000368166.1 794167..795210(-) (recA) [Staphylococcus aureus strain AF4004]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTGGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAATCCACAAATTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P68845

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.435

95.389

0.729
  recA Latilactobacillus sakei subsp. sakei 23K

70.206

97.695

0.686
  recA Streptococcus pneumoniae D39

64.943

100

0.651
  recA Streptococcus pneumoniae Rx1

64.943

100

0.651
  recA Streptococcus pneumoniae TIGR4

64.943

100

0.651
  recA Streptococcus pneumoniae R6

64.943

100

0.651
  recA Streptococcus pyogenes NZ131

68.389

94.813

0.648
  recA Acinetobacter baumannii D1279779

64.368

100

0.646
  recA Streptococcus mutans UA159

64

100

0.646
  recA Streptococcus mitis SK321

64.553

100

0.646
  recA Acinetobacter baylyi ADP1

64.265

100

0.643
  recA Neisseria gonorrhoeae MS11

65.192

97.695

0.637
  recA Neisseria gonorrhoeae MS11

65.192

97.695

0.637
  recA Neisseria gonorrhoeae strain FA1090

65.192

97.695

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.897

97.695

0.634
  recA Streptococcus mitis NCTC 12261

66.066

95.965

0.634
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.389

0.625
  recA Helicobacter pylori 26695

63.636

98.271

0.625
  recA Helicobacter pylori strain NCTC11637

63.636

98.271

0.625
  recA Vibrio cholerae strain A1552

65.644

93.948

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

93.948

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.605

90.49

0.594
  recA Pseudomonas stutzeri DSM 10701

61.012

96.83

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.389

0.582
  recA Glaesserella parasuis strain SC1401

60.681

93.084

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

91.931

0.562