Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PCQ86_RS19040 Genome accession   NZ_CP115182
Coordinates   3941484..3942605 (+) Length   373 a.a.
NCBI ID   WP_011807084.1    Uniprot ID   A0AAX1WXG6
Organism   Diaphorobacter sp. ED-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3936484..3947605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCQ86_RS19015 - 3936508..3937473 (-) 966 WP_011807079.1 tripartite tricarboxylate transporter substrate binding protein BugE -
  PCQ86_RS19020 - 3937584..3938510 (+) 927 WP_015914570.1 LysR substrate-binding domain-containing protein -
  PCQ86_RS19025 - 3938591..3940036 (-) 1446 WP_270174495.1 sensor histidine kinase -
  PCQ86_RS19030 - 3940116..3940790 (-) 675 WP_011807082.1 response regulator transcription factor -
  PCQ86_RS19035 - 3940840..3941334 (-) 495 WP_088888100.1 MarR family winged helix-turn-helix transcriptional regulator -
  PCQ86_RS19040 recA 3941484..3942605 (+) 1122 WP_011807084.1 recombinase RecA Machinery gene
  PCQ86_RS19045 recX 3942686..3943141 (+) 456 WP_011807085.1 recombination regulator RecX -
  PCQ86_RS19050 - 3943375..3945729 (-) 2355 WP_270174496.1 DUF1631 family protein -
  PCQ86_RS19055 secF 3945813..3946766 (-) 954 WP_270174497.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39688.50 Da        Isoelectric Point: 5.2157

>NTDB_id=768689 PCQ86_RS19040 WP_011807084.1 3941484..3942605(+) (recA) [Diaphorobacter sp. ED-3]
MDATVKGNATAVNSEKAKALQAALAQIEKQFGKGTIMRLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPES
SGKTTLTLQVIAEMQKQGGQCAFVDAEHALDVQYASKLGVQLTDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAAL
TPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTG
TIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFL
RENPGLAVEIENKVRESLGIALLPTGHASPAADLPEDKPARGKKADKTGEIEA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=768689 PCQ86_RS19040 WP_011807084.1 3941484..3942605(+) (recA) [Diaphorobacter sp. ED-3]
ATGGACGCCACCGTCAAAGGCAACGCAACCGCCGTCAACAGCGAAAAGGCCAAGGCCCTGCAAGCCGCCCTCGCGCAGAT
CGAAAAGCAGTTCGGCAAGGGCACCATCATGCGCCTGGGCGAGGGCGAGGCCATTGAGGACATCCAGGTGGTCTCCACCG
GCTCGCTGGGCCTGGACATCGCCCTGGGCGTGGGCGGCCTGCCGCGCGGCCGCGTGATCGAGATCTACGGACCGGAAAGC
TCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGAGATGCAGAAGCAAGGCGGCCAGTGCGCTTTCGTGGATGCCGA
GCATGCGCTGGATGTGCAGTACGCCAGCAAGCTCGGCGTTCAGCTCACCGACCTGCTCATCAGCCAGCCGGACACGGGCG
AGCAGGCGCTGGAGATCGTGGACAGCCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTGGTGGACTCGGTCGCCGCCCTC
ACGCCCAAGGCCGAAATCGAGGGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCACGCCTGATGAGCCAGGCACTGCG
CAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGCAGCCCCGAGACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTACGCCTGGACATCCGCCGCACCGGC
ACCATCAAGAAGGGCGACGAGGCGATCGGCAACGAGACCAAGGTGAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTTCAA
GACGGCCGAATTCGACATCCTGTTCGGCGAGGGCATCTCGCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCGCGCA
TCCTGGAAAAGAGTGGCGCCTGGTATGCCTACAACGGCGAAAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTCCTG
CGCGAGAACCCTGGCCTGGCCGTGGAGATCGAGAACAAGGTGCGCGAGAGCCTGGGCATCGCACTGCTGCCCACGGGCCA
CGCGAGCCCGGCGGCCGACCTGCCCGAAGACAAGCCTGCGCGCGGCAAGAAGGCCGACAAGACGGGTGAGATCGAAGCGT
AA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.656

93.566

0.745
  recA Pseudomonas stutzeri DSM 10701

69.565

92.493

0.643
  recA Acinetobacter baylyi ADP1

67.816

93.298

0.633
  recA Acinetobacter baumannii D1279779

67.816

93.298

0.633
  recA Neisseria gonorrhoeae MS11

70.359

89.544

0.63
  recA Neisseria gonorrhoeae strain FA1090

70.359

89.544

0.63
  recA Neisseria gonorrhoeae MS11

70.359

89.544

0.63
  recA Glaesserella parasuis strain SC1401

70.37

86.863

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.419

87.668

0.609
  recA Vibrio cholerae strain A1552

69.419

87.668

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

90.08

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.68

90.617

0.595
  recA Helicobacter pylori strain NCTC11637

65.455

88.472

0.579
  recA Helicobacter pylori 26695

65.455

88.472

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

87.668

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.632

93.298

0.566
  recA Streptococcus pyogenes NZ131

62.006

88.204

0.547
  recA Streptococcus pneumoniae TIGR4

60.725

88.74

0.539
  recA Lactococcus lactis subsp. cremoris KW2

60.725

88.74

0.539
  recA Streptococcus pneumoniae R6

60.725

88.74

0.539
  recA Streptococcus pneumoniae Rx1

60.725

88.74

0.539
  recA Streptococcus pneumoniae D39

60.725

88.74

0.539
  recA Streptococcus mutans UA159

60.909

88.472

0.539
  recA Streptococcus mitis NCTC 12261

60.423

88.74

0.536
  recA Streptococcus mitis SK321

60.423

88.74

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.982

89.544

0.528