Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M8445_RS06425 Genome accession   NZ_CP115165
Coordinates   1310219..1311289 (-) Length   356 a.a.
NCBI ID   WP_273990492.1    Uniprot ID   -
Organism   Deinococcus aquaticus strain PB-314     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1305219..1316289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8445_RS06395 (M8445_06395) - 1305495..1306052 (-) 558 WP_273990486.1 HNH endonuclease -
  M8445_RS06400 (M8445_06400) - 1306165..1306848 (-) 684 WP_273990487.1 MarC family protein -
  M8445_RS06405 (M8445_06405) - 1306900..1307676 (-) 777 WP_273990488.1 hypothetical protein -
  M8445_RS06410 (M8445_06410) - 1307735..1308151 (-) 417 WP_273990489.1 Fur family transcriptional regulator -
  M8445_RS06415 (M8445_06415) - 1308296..1309315 (+) 1020 WP_273990490.1 biotin--[acetyl-CoA-carboxylase] ligase -
  M8445_RS06420 (M8445_06420) - 1309381..1309965 (+) 585 WP_273990491.1 biotin transporter BioY -
  M8445_RS06425 (M8445_06425) recA 1310219..1311289 (-) 1071 WP_273990492.1 recombinase RecA Machinery gene
  M8445_RS18295 thpR 1311299..1312315 (-) 1017 WP_337961611.1 RNA 2',3'-cyclic phosphodiesterase -
  M8445_RS06435 (M8445_06435) - 1312312..1313637 (-) 1326 WP_273990493.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  M8445_RS06440 (M8445_06440) - 1313797..1314126 (-) 330 WP_273990494.1 four-helix bundle copper-binding protein -
  M8445_RS06445 (M8445_06445) - 1314205..1314339 (-) 135 WP_273990495.1 hypothetical protein -
  M8445_RS06450 (M8445_06450) - 1314367..1314687 (-) 321 WP_273990496.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37783.45 Da        Isoelectric Point: 5.6292

>NTDB_id=768514 M8445_RS06425 WP_273990492.1 1310219..1311289(-) (recA) [Deinococcus aquaticus strain PB-314]
MSKEKEITAAPTDAKERAKAIDTAMSQIEKAFGKGSIMKLGAESKLDVQTISTGSLSLDLALGVGGIPKGRVTEIYGPES
GGKTTLALSIIAQAQKAGGTAAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAVDIVVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTGILSKTNTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG
QPIKVGNDAVANTVKVKTVKNKVAAPFKEVELALVYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGDERIGQGKEKAIAY
IAERPDMENEIRERVLTAIRTGNAPELPAKPPVIAE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=768514 M8445_RS06425 WP_273990492.1 1310219..1311289(-) (recA) [Deinococcus aquaticus strain PB-314]
ATGAGCAAGGAAAAAGAAATCACTGCCGCCCCCACCGACGCCAAGGAACGCGCCAAGGCCATCGACACCGCCATGAGCCA
GATCGAGAAGGCGTTCGGCAAGGGCAGCATCATGAAACTCGGCGCCGAGAGCAAACTGGACGTGCAGACCATCAGCACCG
GCAGCCTCAGCCTCGACCTCGCCCTCGGCGTGGGCGGCATCCCCAAGGGCCGCGTCACCGAGATCTACGGCCCGGAATCC
GGCGGTAAGACCACCCTGGCCCTCAGCATCATCGCGCAGGCCCAGAAGGCCGGCGGGACCGCTGCGTTCATCGACGCCGA
ACACGCCCTGGACCCCGTGTACGCCCGCGCGCTCGGCGTGAACACCGACGAACTGCTCGTCTCGCAGCCCGATAACGGTG
AGCAGGCCCTGGAAATCATGGAACTGCTGGTGCGCAGCGGCGCCGTCGATATCGTCGTCGTCGACTCGGTCGCCGCCCTG
ACCCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCTCCCCGGCCTGCAGGCGAGGTTGATGAGTCAGGCGCTGCG
CAAACTGACCGGGATTCTCAGCAAGACGAACACCGCCGCCATCTTCATCAACCAGGTCCGCGAGAAGATCGGCGTGATGT
ACGGCAACCCGGAAACCACCACCGGCGGCCGCGCCCTGAAGTTCTACGCCTCCGTGCGCCTGGACGTCCGCAAGATCGGG
CAGCCCATCAAGGTCGGCAACGACGCCGTCGCGAACACCGTGAAGGTCAAGACCGTGAAGAACAAGGTCGCCGCGCCCTT
CAAGGAAGTCGAACTGGCCCTGGTGTACGGCAAGGGCTTCGACCAGCTGTCCGACCTTGTCACGCTGGCCAGCGACATGG
ACATCATCAAGAAGGCCGGGAGCTTCTACTCGTACGGCGACGAACGCATCGGCCAGGGCAAGGAGAAGGCCATCGCGTAC
ATCGCCGAGCGTCCCGACATGGAAAACGAGATCCGCGAGCGCGTCCTGACCGCCATCCGCACCGGCAACGCCCCGGAACT
GCCCGCCAAGCCCCCCGTCATCGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

91.304

96.91

0.885
  recA Acinetobacter baumannii D1279779

63.609

91.854

0.584
  recA Streptococcus pneumoniae Rx1

64.087

90.73

0.581
  recA Streptococcus pneumoniae R6

64.087

90.73

0.581
  recA Streptococcus pneumoniae D39

64.087

90.73

0.581
  recA Streptococcus pneumoniae TIGR4

64.087

90.73

0.581
  recA Acinetobacter baylyi ADP1

63.385

91.292

0.579
  recA Streptococcus pyogenes NZ131

60.947

94.944

0.579
  recA Streptococcus mitis NCTC 12261

63.777

90.73

0.579
  recA Streptococcus mitis SK321

63.777

90.73

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

61.934

92.978

0.576
  recA Glaesserella parasuis strain SC1401

63.665

90.449

0.576
  recA Streptococcus mutans UA159

60.355

94.944

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.774

91.854

0.567
  recA Vibrio cholerae strain A1552

61.774

91.854

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

89.888

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.202

91.573

0.542
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.951

91.011

0.537
  recA Helicobacter pylori strain NCTC11637

56.012

95.787

0.537
  recA Helicobacter pylori 26695

56.012

95.787

0.537
  recA Ralstonia pseudosolanacearum GMI1000

62.013

86.517

0.537
  recA Neisseria gonorrhoeae MS11

58.824

90.73

0.534
  recA Neisseria gonorrhoeae MS11

58.824

90.73

0.534
  recA Neisseria gonorrhoeae strain FA1090

58.824

90.73

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.057

93.539

0.534
  recA Pseudomonas stutzeri DSM 10701

57.944

90.169

0.522